View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13409_low_16 (Length: 286)

Name: NF13409_low_16
Description: NF13409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13409_low_16
NF13409_low_16
[»] chr5 (3 HSPs)
chr5 (1-264)||(5399829-5400096)
chr5 (109-142)||(38749571-38749604)
chr5 (102-146)||(14818307-14818351)
[»] scaffold0004 (1 HSPs)
scaffold0004 (106-143)||(101015-101052)
[»] chr6 (3 HSPs)
chr6 (109-142)||(17168912-17168945)
chr6 (91-132)||(13815057-13815098)
chr6 (111-151)||(9617454-9617494)
[»] chr7 (2 HSPs)
chr7 (111-151)||(19930940-19930980)
chr7 (109-145)||(30606069-30606105)
[»] chr4 (3 HSPs)
chr4 (102-146)||(32915610-32915654)
chr4 (102-146)||(5555136-5555180)
chr4 (106-146)||(25390890-25390930)
[»] chr8 (2 HSPs)
chr8 (102-149)||(14692470-14692517)
chr8 (106-146)||(18964192-18964232)
[»] chr3 (2 HSPs)
chr3 (92-144)||(41319316-41319369)
chr3 (106-146)||(35222953-35222993)
[»] scaffold0123 (1 HSPs)
scaffold0123 (111-151)||(44524-44564)


Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 5399829 - 5400096
Alignment:
Q  1 cgttcctgaaaaaagagatacatagtaagctatatatataccatcaatcacagattcggatacggacacaagacacgacatatatatgtctgacatcaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  5399829 cgttcctgaaaaaagagatacatagtaagctatatatataccatcaatcacaaactcggatacggacacaagacacgacatatatatgtctgacatcaat 5399928  T
Q  101 gataatttaaaaaatgacataattcaatgtaactatatgtgtcggtatcg----tatatatgtatatgatactgagacacatataatccgaagagtacgt 196  Q
     ||||||||||||||||||||||||||||||| ||||||| || ||||||    ||||||| |||||||||||||||||||| ||||| |||||||||||    
T  5399929 aataatttaaaaaatgacataattcaatgtaattatatgtttcagtatcgtgtatatatatatatatgatactgagacacatctaatctgaagagtacgt 5400028  T
Q  197 gtgtttattaggtatatggacatgtctattaatgatcaatcaatacagtagtactactagaactcaat 264  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  5400029 gtgtttattaggtatatggacatgtcgattaatgatcaatcaatacagtagtactactagaactcaat 5400096  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 142
Target Start/End: Complemental strand, 38749604 - 38749571
Alignment:
Q  109 aaaaaatgacataattcaatgtaactatatgtgt 142  Q
    |||||||||||||||||||||||| |||||||||    
T  38749604 aaaaaatgacataattcaatgtaattatatgtgt 38749571  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 14818351 - 14818307
Alignment:
Q  102 ataatttaaaaaatgacataattcaatgtaactatatgtgtcggt 146  Q
    ||||||| | |||||||||||||||||||||  ||||||||||||    
T  14818351 ataatttgagaaatgacataattcaatgtaaacatatgtgtcggt 14818307  T

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Target: scaffold0004 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 143
Target Start/End: Original strand, 101015 - 101052
Alignment:
Q  106 tttaaaaaatgacataattcaatgtaactatatgtgtc 143  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  101015 tttaaaaaatgacataattcaatgtaattatatgtgtc 101052  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 142
Target Start/End: Original strand, 17168912 - 17168945
Alignment:
Q  109 aaaaaatgacataattcaatgtaactatatgtgt 142  Q
    ||||||||||||||||||||||||||||||||||    
T  17168912 aaaaaatgacataattcaatgtaactatatgtgt 17168945  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 132
Target Start/End: Complemental strand, 13815098 - 13815057
Alignment:
Q  91 tgacatcaatgataatttaaaaaatgacataattcaatgtaa 132  Q
    ||||| |||| ||||||||||||||||||||||| |||||||    
T  13815098 tgacaccaataataatttaaaaaatgacataattgaatgtaa 13815057  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 9617454 - 9617494
Alignment:
Q  111 aaaatgacataattcaatgtaactatatgtgtcggtatcgt 151  Q
    ||||| |||||||||||||||| ||||||||||||| ||||    
T  9617454 aaaatcacataattcaatgtaattatatgtgtcggtgtcgt 9617494  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 19930980 - 19930940
Alignment:
Q  111 aaaatgacataattcaatgtaactatatgtgtcggtatcgt 151  Q
    |||||||||||||||||||||| ||||||||||| ||||||    
T  19930980 aaaatgacataattcaatgtaattatatgtgtcgatatcgt 19930940  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 145
Target Start/End: Complemental strand, 30606105 - 30606069
Alignment:
Q  109 aaaaaatgacataattcaatgtaactatatgtgtcgg 145  Q
    ||||||||||||||||||||||||| |||||||||||    
T  30606105 aaaaaatgacataattcaatgtaaccatatgtgtcgg 30606069  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 32915654 - 32915610
Alignment:
Q  102 ataatttaaaaaatgacataattcaatgtaactatatgtgtcggt 146  Q
    |||||||||||||| |||||||||||||||| ||||||| |||||    
T  32915654 ataatttaaaaaatcacataattcaatgtaattatatgtttcggt 32915610  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 5555180 - 5555136
Alignment:
Q  102 ataatttaaaaaatgacataattcaatgtaactatatgtgtcggt 146  Q
    |||||||||||||| | |||||| ||||||| |||||||||||||    
T  5555180 ataatttaaaaaataagataatttaatgtaattatatgtgtcggt 5555136  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 25390930 - 25390890
Alignment:
Q  106 tttaaaaaatgacataattcaatgtaactatatgtgtcggt 146  Q
    |||| |||||||||||||||||| |||| ||||||||||||    
T  25390930 tttagaaaatgacataattcaatataaccatatgtgtcggt 25390890  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 149
Target Start/End: Original strand, 14692470 - 14692517
Alignment:
Q  102 ataatttaaaaaatgacataattcaatgtaactatatgtgtcggtatc 149  Q
    ||||||| | ||||||||||||||| |||||||||| |||||||||||    
T  14692470 ataatttgagaaatgacataattcagtgtaactataggtgtcggtatc 14692517  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 18964192 - 18964232
Alignment:
Q  106 tttaaaaaatgacataattcaatgtaactatatgtgtcggt 146  Q
    |||| ||||| |||||||||||||||| |||||||||||||    
T  18964192 tttagaaaatcacataattcaatgtaattatatgtgtcggt 18964232  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 41319369 - 41319316
Alignment:
Q  92 gacatcaatgataattt-aaaaaatgacataattcaatgtaactatatgtgtcg 144  Q
    |||| |||| ||||||| |||||||||||||||||||||||| | |||||||||    
T  41319369 gacaccaataataatttgaaaaaatgacataattcaatgtaattgtatgtgtcg 41319316  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 35222953 - 35222993
Alignment:
Q  106 tttaaaaaatgacataattcaatgtaactatatgtgtcggt 146  Q
    |||| ||||| |||||||||||||||| |||||||||||||    
T  35222953 tttagaaaatcacataattcaatgtaattatatgtgtcggt 35222993  T

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Target: scaffold0123 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 44564 - 44524
Alignment:
Q  111 aaaatgacataattcaatgtaactatatgtgtcggtatcgt 151  Q
    ||||| |||||||||| ||||| ||||||||||||||||||    
T  44564 aaaatcacataattcagtgtaattatatgtgtcggtatcgt 44524  T

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