View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13409_low_2 (Length: 637)
Name: NF13409_low_2
Description: NF13409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13409_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 599; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 18 - 628
Target Start/End: Original strand, 47582148 - 47582758
Alignment:
| Q |
18 |
atgttaaacgatttgagaagggagactggaaatgcttctgcaaaatttgctgtcaagtcagtgaacctcacagaaaaccaaaaagtatatggcggtgctt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47582148 |
atgttaaacgatttgagaagggagactggaaatgcttctgcaaaatttgctgtcaagtcagtgaacctcacagaaaaccaaaaagtatatggcggtgctt |
47582247 |
T |
|
| Q |
118 |
ggtgcctcccgtgcctatctgcagagaactgcagctggtgtcttagtgatgccatagctgaagttccaaccagttgctgcagaggaaaatctggaggcac |
217 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47582248 |
ggtgcctcccatgcctatctgcagagaactgcagctggtgtcttagtgatgccatagctgaagttccaaccagttgctgcagaggaaaatctggaggcac |
47582347 |
T |
|
| Q |
218 |
aatattatatcccagttgtggtgttagatttgaattatatccattccacaaggcagacgacaataattcttgggtgctgcccccacccacaaatcctcgc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
47582348 |
aatattatatcccagttgtggtgttagatttgaattatatccattccacaaggcagacgacaataattcttgggtgctgcctccacccacaaatcctcgc |
47582447 |
T |
|
| Q |
318 |
ctttcagctcgaccaggtttaaacttttgattatccctcatttacacttttttaattttacgaccatttctgacataataagacatcaatgtaatcatac |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47582448 |
ctttcagctcgaccaggtttaaacttttgattatccctcatttacacttttttaattttacgaccatttctgacataataagacatcaatgtaatcatac |
47582547 |
T |
|
| Q |
418 |
catatattactgtcaacccatgattactatatctagcaaaagatatatcttctgtaagaacttgggagaacaagaattgaaatcaccaataatcttttcc |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47582548 |
catatattactgtcaacccatgattactatatctagcaaaagatatatcttctgtaagaacttgggagaacaagaattgaaatcaccaataatcttttcc |
47582647 |
T |
|
| Q |
518 |
tgtccctctaatgaaaatataattagttcatcaatattttatcaattaggagagggtgttagcttttcgtgaaaaaagtttctgctaggtgttatgtttc |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
47582648 |
tgtccctctaatgaaaatataattagttcatcaatattttatcaattaggagagggtgttagcttttcgtgaaaaaagtttctgctagatgttatgtttc |
47582747 |
T |
|
| Q |
618 |
tactttctgtg |
628 |
Q |
| |
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||||||||||| |
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| T |
47582748 |
tactttctgtg |
47582758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 18 - 456
Target Start/End: Original strand, 47572450 - 47572901
Alignment:
| Q |
18 |
atgttaaacgatttgagaagggagactggaaatgcttctgcaaaatttgctgtcaagtcagtgaacctcacagaaaaccaaaaagtatatggcggtgctt |
117 |
Q |
| |
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||||| ||||||||||||| ||| | | ||||||||||| |||||| |||| ||||||||||| ||||||| ||||||||| ||||||| || || |
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| T |
47572450 |
atgttgaacgatttgagaaacgaggcagcaaatgcttctggaaaattggctgataagtcagtgaatatcacagacaaccaaaaactatatggttatgttt |
47572549 |
T |
|
| Q |
118 |
ggtgcctcccgtgcctatctgcagagaactgcagctggtgtcttagtgatgccatagctgaagttccaaccagttgctgcagaggaaaatctggaggcac |
217 |
Q |
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| T |
47572550 |
ggtgcgtcccatacctatcttcagaaaactgtagctggtgtcttagcgatgccatagcagaaattccaactagttgttgcagaggaaaatctggaggagc |
47572649 |
T |
|
| Q |
218 |
aatattatatcccagttgtggtgttagatttgaattatatccattccacaaggcagacgacaataattcttggg------tgctgcccccacccacaaat |
311 |
Q |
| |
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|||||| ||||||||||||||| ||| |||||| ||| |||| |||||||||||| || ||||| | |||||| || || ||||| |||| | |
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| T |
47572650 |
aatattttatcccagttgtggtcttaaatttgacttaaatcctttccacaaggcacacaacaatgttgcttgggggccaccgcctccaccaccaacaatt |
47572749 |
T |
|
| Q |
312 |
cctcgcctttcagctcgaccaggtttaaacttttgattatccctcatttacacttttttaattttacgaccatttctgacataataagacatcaatgta- |
410 |
Q |
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||||| |||||||| ||||||||||| ||||||| |||| |||| || | ||| |||||||||| | ||||| ||||| ||||||||| |||| | |
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| T |
47572750 |
cctcgtgcttcagctccaccaggtttaagcttttgaaaatccttcatatatattttcttaattttactaacatttgtgacacaataagacagcaatcaag |
47572849 |
T |
|
| Q |
411 |
-----atcata-ccatatattactgtcaacccatgattactatatctagcaa |
456 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
47572850 |
ttaatatcatacccatatattactgtcaacccatgactactatatctagcaa |
47572901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 415 - 558
Target Start/End: Original strand, 47570697 - 47570847
Alignment:
| Q |
415 |
taccatatattactgtcaacccatgattactatatctagcaaaagatatat--cttctgtaagaacttgg------gagaacaagaattgaaatcaccaa |
506 |
Q |
| |
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|||||||||| |||||||||||||| ||||||||||||||| |||||||| |||||| || ||||||| |||||| ||| |||||||||||| |
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| T |
47570697 |
taccatatatcactgtcaacccatggatactatatctagcaagagatatatatcttctgcaataacttggtacattgagaacgtgaactgaaatcaccaa |
47570796 |
T |
|
| Q |
507 |
taatcttttcctgtccctctaatgaaaatataattagttcatcaatatttta |
558 |
Q |
| |
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|||||||||||| ||||||||||||||| |||| ||||| | |||||||||| |
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| T |
47570797 |
taatcttttcctatccctctaatgaaaa-ataaatagttaaacaatatttta |
47570847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 530 - 583
Target Start/End: Original strand, 47573217 - 47573269
Alignment:
| Q |
530 |
gaaaatataattagttcatcaatattttatcaattaggagagggtgttagcttt |
583 |
Q |
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|||||||||| |||||||||||||||||| || ||||||||||| |||||||| |
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| T |
47573217 |
gaaaatataagtagttcatcaatattttaagaactaggagagggt-ttagcttt |
47573269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 502 - 558
Target Start/End: Original strand, 47566249 - 47566304
Alignment:
| Q |
502 |
accaataatcttttcctgtccctctaatgaaaatataattagttcatcaatatttta |
558 |
Q |
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||||||||||||||| | |||||| |||||||| |||| ||||| |||||||||||| |
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| T |
47566249 |
accaataatcttttcttatccctcaaatgaaaa-ataaatagttaatcaatatttta |
47566304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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