View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13409_low_20 (Length: 231)

Name: NF13409_low_20
Description: NF13409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13409_low_20
NF13409_low_20
[»] scaffold0154 (2 HSPs)
scaffold0154 (1-200)||(27355-27554)
scaffold0154 (34-82)||(28189-28237)
[»] chr2 (3 HSPs)
chr2 (29-200)||(16043374-16043546)
chr2 (31-82)||(16044185-16044236)
chr2 (27-78)||(20244208-20244259)
[»] scaffold1956 (1 HSPs)
scaffold1956 (28-192)||(1026-1191)
[»] chr4 (8 HSPs)
chr4 (29-200)||(55500869-55501041)
chr4 (29-79)||(52720597-52720647)
chr4 (28-78)||(2713880-2713930)
chr4 (24-78)||(31876783-31876837)
chr4 (59-133)||(5825364-5825440)
chr4 (59-133)||(36451369-36451445)
chr4 (28-72)||(1805756-1805800)
chr4 (85-137)||(20350396-20350448)
[»] chr3 (6 HSPs)
chr3 (117-192)||(40427221-40427296)
chr3 (29-72)||(1258665-1258708)
chr3 (29-72)||(34873692-34873735)
chr3 (27-71)||(44445488-44445532)
chr3 (27-78)||(46993319-46993370)
chr3 (29-69)||(46187148-46187188)
[»] chr6 (2 HSPs)
chr6 (27-71)||(18246175-18246219)
chr6 (28-142)||(32079723-32079840)
[»] chr5 (5 HSPs)
chr5 (29-79)||(3135923-3135973)
chr5 (30-98)||(27645836-27645906)
chr5 (28-99)||(38064141-38064214)
chr5 (59-101)||(6804921-6804965)
chr5 (77-133)||(33283215-33283271)
[»] chr8 (4 HSPs)
chr8 (28-71)||(2320221-2320264)
chr8 (29-79)||(10382031-10382081)
chr8 (59-133)||(788056-788132)
chr8 (29-69)||(9484265-9484305)
[»] chr1 (6 HSPs)
chr1 (37-76)||(35972601-35972640)
chr1 (29-98)||(41465236-41465307)
chr1 (59-133)||(28371645-28371722)
chr1 (27-76)||(41466211-41466260)
chr1 (29-78)||(49534433-49534482)
chr1 (59-143)||(27418193-27418280)
[»] chr7 (8 HSPs)
chr7 (37-78)||(7330238-7330279)
chr7 (27-99)||(8466514-8466588)
chr7 (29-72)||(31234116-31234159)
chr7 (28-71)||(41236788-41236831)
chr7 (29-82)||(85082-85135)
chr7 (59-137)||(30915764-30915844)
chr7 (85-137)||(30402791-30402843)
chr7 (59-132)||(42607111-42607186)


Alignment Details
Target: scaffold0154 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 27355 - 27554
Alignment:
Q  1 agatatatcctctagatatcaaaatcatggtggcatttcacatgggaaggtataaagctttcccaccatggaaaagttttttgaccattagatcaaatga 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||    
T  27355 agatatatcctctagatatcaaaatcatggtggcattttacatgggaaggtataaagtttttccaccatggaaaagtttttggaccattagatcaaatga 27454  T
Q  101 aaatcacaacattatcatactctctcaacactatattcttttaacactctttcaccaatttctctctcctttgtatcttccttcatgcatcaacactagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27455 aaatcacaacattatcatactctctcaacactatattcttttaacactctttcaccaatttctctctcctttgtatcttccttcatgcatcaacactagt 27554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 28237 - 28189
Alignment:
Q  34 catttcacatgggaaggtataaagctttcccaccatggaaaagtttttt 82  Q
    ||||||||||| ||||||||||||||||||| |||||| ||||||||||    
T  28237 catttcacatgagaaggtataaagctttcccgccatgggaaagtttttt 28189  T

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Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 29 - 200
Target Start/End: Original strand, 16043374 - 16043546
Alignment:
Q  29 ggtggcatttcacatgggaaggtataaagctttcccaccatggaaaagtttt-ttgaccattagatcaaatgaaaatcacaacattatcatactctctca 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  16043374 ggtggcatttcacatgggaaggtataaagctttcccaccatggaaaagtttttttgaccattagatcaaatgaaaatcaaaacattatcatactctctca 16043473  T
Q  128 acactatattcttttaacactctttcaccaatttctctctcctttgtatcttccttcatgcatcaacactagt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  16043474 acactatattcttttaacactctttcaccaatttctctctcctttgcatcttccttcacgcatcaacactagt 16043546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 16044236 - 16044185
Alignment:
Q  31 tggcatttcacatgggaaggtataaagctttcccaccatggaaaagtttttt 82  Q
    ||||||||||||||||| ||||||||||||| ||| ||||| ||||||||||    
T  16044236 tggcatttcacatgggagggtataaagcttttccatcatgggaaagtttttt 16044185  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 78
Target Start/End: Complemental strand, 20244259 - 20244208
Alignment:
Q  27 atggtggcatttcacatgggaaggtataaagctttcccaccatggaaaagtt 78  Q
    |||||||||||||||||||||| |  |||  |||||||||||||||||||||    
T  20244259 atggtggcatttcacatgggaaaggttaatcctttcccaccatggaaaagtt 20244208  T

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Target: scaffold1956 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: scaffold1956
Description:

Target: scaffold1956; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 28 - 192
Target Start/End: Original strand, 1026 - 1191
Alignment:
Q  28 tggtggcatttcacatgggaaggtataaagctttcccaccatggaaaagtttt-ttgaccattagatcaaatgaaaatcacaacattatcatactctctc 126  Q
    ||||| ||||||||||| |||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1026 tggtgacatttcacatgagaaggtataaagcttttccaccatgggaaagtttttttgaccattagatcaaatgaaaatcacaacattatcatactctctc 1125  T
Q  127 aacactatattcttttaacactctttcaccaatttctctctcctttgtatcttccttcatgcatca 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1126 aacactatattcttttaacactctttcaccaatttctctctcctttgtatcttccttcacgcatca 1191  T

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Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 29 - 200
Target Start/End: Complemental strand, 55501041 - 55500869
Alignment:
Q  29 ggtggcatttcacatgggaaggtataaagctttcccaccatggaaaagtttttt-gaccattagatcaaatgaaaatcacaacattatcatactctctca 127  Q
    |||||||||| ||||| ||||||||||| |||| | ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  55501041 ggtggcattttacatgagaaggtataaaacttttctaccatgggaaagtttttttgaccattagatcaaatgaaaatcacaacattatcatactctctca 55500942  T
Q  128 acactatattcttttaacactctttcaccaatttctctctcctttgtatcttccttcatgcatcaacactagt 200  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  55500941 acattatattcttttaacactctttcaccaatttctctctcctttgtatcttccttcacgcatcaacactagt 55500869  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 52720597 - 52720647
Alignment:
Q  29 ggtggcatttcacatgggaaggtataaagctttcccaccatggaaaagttt 79  Q
    |||||||||||||||||||||||||||| | |||||||||| | |||||||    
T  52720597 ggtggcatttcacatgggaaggtataaaacattcccaccataggaaagttt 52720647  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 2713930 - 2713880
Alignment:
Q  28 tggtggcatttcacatgggaaggtataaagctttcccaccatggaaaagtt 78  Q
    ||||||||||||||||||||| |  |||  |||||||||||||||||||||    
T  2713930 tggtggcatttcacatgggaaaggttaatcctttcccaccatggaaaagtt 2713880  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 31876783 - 31876837
Alignment:
Q  24 atcatggtggcatttcacatgggaaggtataaagctttcccaccatggaaaagtt 78  Q
    ||||||||||||||||||||||||| |  |||  |||| ||||||||||||||||    
T  31876783 atcatggtggcatttcacatgggaaaggttaatccttttccaccatggaaaagtt 31876837  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 133
Target Start/End: Original strand, 5825364 - 5825440
Alignment:
Q  59 tttcccaccatggaaaagttttttg--accattagatcaaatgaaaatcacaacattatcatactctctcaacacta 133  Q
    ||||||||||| | ||||||||||   |||||||||||||||||  | ||||  |||||| ||||||||||||||||    
T  5825364 tttcccaccatagcaaagttttttctaaccattagatcaaatgaggaacacattattatcctactctctcaacacta 5825440  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 133
Target Start/End: Complemental strand, 36451445 - 36451369
Alignment:
Q  59 tttcccaccatggaaaagtt--ttttgaccattagatcaaatgaaaatcacaacattatcatactctctcaacacta 133  Q
    |||| |||||||||||||||  || || ||||||||| ||||||||| || | | ||||| ||||||||||||||||    
T  36451445 tttctcaccatggaaaagttgattatgtccattagattaaatgaaaaacaaatccttatcctactctctcaacacta 36451369  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 1805800 - 1805756
Alignment:
Q  28 tggtggcatttcacatgggaaggtataaagctttcccaccatgga 72  Q
    ||||||||||| |||| |||| ||||||| |||||||||||||||    
T  1805800 tggtggcatttaacataggaaagtataaaactttcccaccatgga 1805756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 20350396 - 20350448
Alignment:
Q  85 ccattagatcaaatgaaaatcacaacattatcatactctctcaacactatatt 137  Q
    |||||| |||||||||| |||| |   ||||||||||||||||||||||||||    
T  20350396 ccattaaatcaaatgaagatcatacttttatcatactctctcaacactatatt 20350448  T

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Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 117 - 192
Target Start/End: Complemental strand, 40427296 - 40427221
Alignment:
Q  117 atactctctcaacactatattcttttaacactctttcaccaatttctctctcctttgtatcttccttcatgcatca 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  40427296 atactctctcaacactatattcttttaacactctttcaccaatttctctctcctttgtatcttccttcacgcatca 40427221  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 1258665 - 1258708
Alignment:
Q  29 ggtggcatttcacatgggaaggtataaagctttcccaccatgga 72  Q
    |||||||||||||||||||||||||||| | |||||||||||||    
T  1258665 ggtggcatttcacatgggaaggtataaaaccttcccaccatgga 1258708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 34873735 - 34873692
Alignment:
Q  29 ggtggcatttcacatgggaaggtataaagctttcccaccatgga 72  Q
    |||||||||||||||||||||||||||| | |||||||||||||    
T  34873735 ggtggcatttcacatgggaaggtataaaaccttcccaccatgga 34873692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 44445488 - 44445532
Alignment:
Q  27 atggtggcatttcacatgggaaggtataaagctttcccaccatgg 71  Q
    ||||||||||||||||||||||| |||||| | ||||||||||||    
T  44445488 atggtggcatttcacatgggaagatataaaaccttcccaccatgg 44445532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 46993319 - 46993370
Alignment:
Q  27 atggtggcatttcacatgggaaggtataaagctttcccaccatggaaaagtt 78  Q
    |||| ||||||| ||||||||| || |||| |||||||||||||||||||||    
T  46993319 atggcggcatttaacatgggaaagtgtaaaactttcccaccatggaaaagtt 46993370  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 46187148 - 46187188
Alignment:
Q  29 ggtggcatttcacatgggaaggtataaagctttcccaccat 69  Q
    |||||||||||||||||||| || |||| ||||||||||||    
T  46187148 ggtggcatttcacatgggaaagtgtaaaactttcccaccat 46187188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 18246175 - 18246219
Alignment:
Q  27 atggtggcatttcacatgggaaggtataaagctttcccaccatgg 71  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  18246175 atggtggcatttcacatgggaaggtataaaactttcccaccatgg 18246219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 142
Target Start/End: Complemental strand, 32079840 - 32079723
Alignment:
Q  28 tggtggcatttcacatgggaaggtataaagctttcccaccatggaaaagtt---ttttgaccattagatcaaatgaaaatcacaacattatcatactctc 124  Q
    ||||||||||||||||||||| || |||| |||||||||||||||  ||||   |||| | ||||  |||||| ||| | |||| ||||||||| ||||     
T  32079840 tggtggcatttcacatgggaaagtctaaaactttcccaccatggatcagtttggttttaatcatttaatcaaaggaataccacagcattatcatgctctt 32079741  T
Q  125 tcaacactatattctttt 142  Q
    ||| ||||||||| ||||    
T  32079740 tcatcactatattttttt 32079723  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 3135923 - 3135973
Alignment:
Q  29 ggtggcatttcacatgggaaggtataaagctttcccaccatggaaaagttt 79  Q
    |||||||||||||||||||||||||||| | |||||||||||| |||||||    
T  3135923 ggtggcatttcacatgggaaggtataaaaccttcccaccatgggaaagttt 3135973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 98
Target Start/End: Original strand, 27645836 - 27645906
Alignment:
Q  30 gtggcatttcacatgggaaggtataaagctttcccaccatggaaaagtt--ttttgaccattagatcaaat 98  Q
    |||||||||||||||||||||| |||| | ||||||||||| |||||||  |||||||| |||||| ||||    
T  27645836 gtggcatttcacatgggaaggtgtaaaaccttcccaccatgaaaaagtttgttttgacctttagataaaat 27645906  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 38064141 - 38064214
Alignment:
Q  28 tggtggcatttcacatgggaaggtataaagctttcccaccatggaaaagtt--ttttgaccattagatcaaatg 99  Q
    |||||||||||||||||||||||   ||| |||||||||||||| ||||||  |||| |||||||||| |||||    
T  38064141 tggtggcatttcacatgggaagggtgaaaactttcccaccatgggaaagttacttttaaccattagattaaatg 38064214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 101
Target Start/End: Original strand, 6804921 - 6804965
Alignment:
Q  59 tttcccaccatggaaaagt--tttttgaccattagatcaaatgaa 101  Q
    |||||||||||||||||||  ||||||||||| ||||||||||||    
T  6804921 tttcccaccatggaaaagtactttttgaccatcagatcaaatgaa 6804965  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 133
Target Start/End: Original strand, 33283215 - 33283271
Alignment:
Q  77 ttttttgaccattagatcaaatgaaaatcacaacattatcatactctctcaacacta 133  Q
    ||||||||||||||||||||||||  | ||||   |||||||||||||||| |||||    
T  33283215 ttttttgaccattagatcaaatgaggaacacatttttatcatactctctcatcacta 33283271  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 2320264 - 2320221
Alignment:
Q  28 tggtggcatttcacatgggaaggtataaagctttcccaccatgg 71  Q
    ||||||||||||||||||||||||||||| | ||||||||||||    
T  2320264 tggtggcatttcacatgggaaggtataaaaccttcccaccatgg 2320221  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 10382031 - 10382081
Alignment:
Q  29 ggtggcatttcacatgggaaggtataaagctttcccaccatggaaaagttt 79  Q
    |||||||||||||||| ||||||||||| | ||||||| |||| |||||||    
T  10382031 ggtggcatttcacatgcgaaggtataaaacattcccactatgggaaagttt 10382081  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 133
Target Start/End: Original strand, 788056 - 788132
Alignment:
Q  59 tttcccaccatggaaaagtttttt--gaccattagatcaaatgaaaatcacaacattatcatactctctcaacacta 133  Q
    ||||||||||| | ||||||||||  ||||||||||||||||||  | ||||  |||||| ||| ||||||||||||    
T  788056 tttcccaccatagcaaagttttttctgaccattagatcaaatgaggaacacattattatcctaccctctcaacacta 788132  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 9484265 - 9484305
Alignment:
Q  29 ggtggcatttcacatgggaaggtataaagctttcccaccat 69  Q
    ||||||||||||||| |||||||||||| | ||||||||||    
T  9484265 ggtggcatttcacattggaaggtataaaacattcccaccat 9484305  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 76
Target Start/End: Complemental strand, 35972640 - 35972601
Alignment:
Q  37 ttcacatgggaaggtataaagctttcccaccatggaaaag 76  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  35972640 ttcacatgggaaggtataaagctttcccaccatgggaaag 35972601  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 41465236 - 41465307
Alignment:
Q  29 ggtggcatttcacatgggaaggtataaagctttcccaccatggaaaagtt--ttttgaccattagatcaaat 98  Q
    |||||| |||||||||||||||| |||| | |||||||||||| ||||||  |||||||  |||||||||||    
T  41465236 ggtggcttttcacatgggaaggtgtaaaaccttcccaccatgggaaagtttattttgacatttagatcaaat 41465307  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 133
Target Start/End: Complemental strand, 28371722 - 28371645
Alignment:
Q  59 tttcccaccatggaaaagtt---ttttgaccattagatcaaatgaaaatcacaacattatcatactctctcaacacta 133  Q
    ||||||||||||| ||||||   |||||||||||||||||||  |||| |||| | ||||||||||| |||| |||||    
T  28371722 tttcccaccatgggaaagttagtttttgaccattagatcaaaccaaaaacacatccttatcatactccctcatcacta 28371645  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 41466211 - 41466260
Alignment:
Q  27 atggtggcatttcacatgggaaggtataaagctttcccaccatggaaaag 76  Q
    ||||||||  |||||||||||||||||||| | |||||||||||| ||||    
T  41466211 atggtggctgttcacatgggaaggtataaaaccttcccaccatgggaaag 41466260  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 78
Target Start/End: Complemental strand, 49534482 - 49534433
Alignment:
Q  29 ggtggcatttcacatgggaaggtataaagctttcccaccatggaaaagtt 78  Q
    |||||||||||||||||||| |  |||  |||||||||||||||||||||    
T  49534482 ggtggcatttcacatgggaaaggttaatcctttcccaccatggaaaagtt 49534433  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 143
Target Start/End: Original strand, 27418193 - 27418280
Alignment:
Q  59 tttcccaccatggaaaagt--tttttgaccattagatcaaatgaaaatcacaacattatcatactctctc-aacactatattctttta 143  Q
    |||||||||||| ||||||  ||||| |||||||||||||||||| | ||||   || | |||||||||| ||||||||||| |||||    
T  27418193 tttcccaccatgaaaaagtaatttttaaccattagatcaaatgaagagcacactcttgttatactctctcgaacactatattatttta 27418280  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 78
Target Start/End: Original strand, 7330238 - 7330279
Alignment:
Q  37 ttcacatgggaaggtataaagctttcccaccatggaaaagtt 78  Q
    |||||||||||||||||||||||||| ||||||| |||||||    
T  7330238 ttcacatgggaaggtataaagctttctcaccatgaaaaagtt 7330279  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 99
Target Start/End: Complemental strand, 8466588 - 8466514
Alignment:
Q  27 atggtggcatttcacatgggaaggtataaagctttcccaccatggaaaagtt--ttttgaccattagatcaaatg 99  Q
    ||||||||||||||||||||||||   ||| |||| ||||||||| ||||||  |||| |||||||||| |||||    
T  8466588 atggtggcatttcacatgggaagggtgaaaacttttccaccatgggaaagttacttttaaccattagattaaatg 8466514  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 31234116 - 31234159
Alignment:
Q  29 ggtggcatttcacatgggaaggtataaagctttcccaccatgga 72  Q
    |||||||||||| ||||||||||||||| | |||||||||||||    
T  31234116 ggtggcatttcatatgggaaggtataaaaccttcccaccatgga 31234159  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 41236788 - 41236831
Alignment:
Q  28 tggtggcatttcacatgggaaggtataaagctttcccaccatgg 71  Q
    |||||||||||||||||||||||| |||| | ||||||||||||    
T  41236788 tggtggcatttcacatgggaaggtgtaaaaccttcccaccatgg 41236831  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 85135 - 85082
Alignment:
Q  29 ggtggcatttcacatgggaaggtataaagctttcccaccatggaaaagtttttt 82  Q
    |||||||||||||||||||| |   ||  |||||||||||||||||||||||||    
T  85135 ggtggcatttcacatgggaaaggtgaatcctttcccaccatggaaaagtttttt 85082  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 137
Target Start/End: Original strand, 30915764 - 30915844
Alignment:
Q  59 tttcccaccatggaaaagtt--ttttgaccattagatcaaatgaaaatcacaacattatcatactctctcaacactatatt 137  Q
    ||||||||||||| |||||   ||||  ||||||||||||||||| | || |   ||||||||||||||||||||||||||    
T  30915764 tttcccaccatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacactatatt 30915844  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 30402843 - 30402791
Alignment:
Q  85 ccattagatcaaatgaaaatcacaacattatcatactctctcaacactatatt 137  Q
    ||||||||||||||||| | || |   ||||||||||||||||||||||||||    
T  30402843 ccattagatcaaatgaagaccatacttttatcatactctctcaacactatatt 30402791  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 132
Target Start/End: Original strand, 42607111 - 42607186
Alignment:
Q  59 tttcccaccatggaaaagtt--ttttgaccattagatcaaatgaaaatcacaacattatcatactctctcaacact 132  Q
    ||||||||||||| ||||||  ||||| |||||||||||||||| || |||||  |||||||  ||| ||||||||    
T  42607111 tttcccaccatgggaaagttgtttttgtccattagatcaaatgagaaacacaatcttatcatgatctatcaacact 42607186  T

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