View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13409_low_3 (Length: 630)

Name: NF13409_low_3
Description: NF13409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13409_low_3
NF13409_low_3
[»] chr8 (3 HSPs)
chr8 (8-611)||(14003254-14003856)
chr8 (8-611)||(5766948-5767553)
chr8 (298-343)||(17627610-17627655)
[»] chr1 (1 HSPs)
chr1 (264-338)||(19468064-19468138)
[»] chr5 (1 HSPs)
chr5 (237-464)||(38266985-38267213)
[»] chr4 (5 HSPs)
chr4 (318-449)||(641449-641580)
chr4 (264-342)||(547382-547460)
chr4 (246-344)||(55908278-55908376)
chr4 (407-467)||(1601013-1601073)
chr4 (321-446)||(3438101-3438226)
[»] scaffold0262 (1 HSPs)
scaffold0262 (268-338)||(390-460)
[»] chr2 (1 HSPs)
chr2 (246-344)||(1037214-1037312)


Alignment Details
Target: chr8 (Bit Score: 572; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 8 - 611
Target Start/End: Original strand, 14003254 - 14003856
Alignment:
Q  8 tgagatgaagctgctgcagattggggaaaagggcagcaaacatgatgatattttgatcttgtaaacaagtgctagccagaaagagagacttgaattgagg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14003254 tgagatgaagctgctgcagattggggaaaagggcagcaaacatgatgatattttgatcttgtaaacaagtgctagccagaaagagagacttgaattgagg 14003353  T
Q  108 gtttacaagacgatccatcagagaattaggtatggtggttccctggatatttgtgcgattcatattgatctcggtaagtgaaggacagttggtaatgaga 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14003354 gtttacaagacgatccatcagagaattaggtatggtggttccctggatatttgtgcgattcatattgatctcggtaagtgaaggacagttggtaatgaga 14003453  T
Q  208 gcaaagaaagtggaaactctgcgcaagcgacaattaccaaggttgatagagagcagatcaccaagaaacaaagacaactcagcaacacaatgatcattca 307  Q
    |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14003454 gcaaagaaagtggaaactgtgagcaagcgacaattaccaaggttgatagagagcagatcaccaagaaacaaagacaactcagcagcacaatgatcattca 14003553  T
Q  308 aaaaatcagcatattgaagatccaaatgttggatacgtttcgacttagataacaaaaatgagattccagaataagtatatccggggcaatagctgagtac 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14003554 aaaaatcagcatattgaagatccaaatgttggatacgtttcgacttagataacaaaaatgagattccagaataagtatatccggggcaatagctgagtac 14003653  T
Q  408 aagcctcctcaaaggaagactttccattgcaatggaggagaggaattgatctgagatacgaaatcccgtcaaaagaagagaagtcaaatcccttcaaact 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  14003654 aagcctcctcaaaggaagactttccattgcaatggaggagaggaattgatctgagatatgaaatcccgtcaaaagaagagaagtc-aatcccttcaaact 14003752  T
Q  508 caacaaggagtcgatgaaatgtgaggtaagatgttccaaaccagtagtaacagtacctgtaatggataaagaagtcaatgttggtttctggcggagagca 607  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  14003753 caacaaggagtcgatgaaatgtgaggtaagatattccaaaccagtagtaacagtacctgtaatggataaagaagtcaatgttggtctctggcggagagca 14003852  T
Q  608 agat 611  Q
    ||||    
T  14003853 agat 14003856  T

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Target: chr8; HSP #2
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 8 - 611
Target Start/End: Complemental strand, 5767553 - 5766948
Alignment:
Q  8 tgagatgaagctgctgcagattggggaaaagggcagcaaacatgatgatattttgatcttgtaaacaagtg---ctagccagaaagagagacttgaattg 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |   ||||||||||||||||||||||||||    
T  5767553 tgagatgaagctgctgcagattggggaaaagggcagcaaacatgatgatattttgatcttctaaacaagcggcgctagccagaaagagagacttgaattg 5767454  T
Q  105 agggtttacaagacgatccatcagagaattaggtatggtggttccctggatatttgtgcgattcatattgatctcggtaagtgaaggacagttggtaatg 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5767453 agggtttacaagacgatccatcagagaattaggtatggtggttccctggatatttgtgcgattcatattgatctcggtaagtgaaggacagttggtaatg 5767354  T
Q  205 agagcaaagaaagtggaaactctgcgcaagcgacaattaccaaggttgatagagagcagatcaccaagaaacaaagacaactcagcaacacaatgatcat 304  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5767353 agagcaaagaaagtggaaactgtgagcaagcgacaattaccaaggttgagagagagcagatcaccaagaaacaaagacaactcagcaacacaatgatcat 5767254  T
Q  305 tcaaaaaatcagcatattgaagatccaaatgttggatacgtttcgacttagataacaaaaatgagattccagaataagtatatccggggcaatagctgag 404  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5767253 tcaaaaaatcagtatattgaagatccaaatgttggatacgtttcgacttagataacaaaaatgagattccagaataagtatatccggggcaatagctgag 5767154  T
Q  405 tacaagcctcctcaaaggaagactttccattgcaatggaggagaggaattgatctgagatacgaaatcccgtcaaaagaagagaagtcaaatcccttcaa 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  5767153 tacaagcctcctcaaaggaagactttccattgcaatggaggagagaaattgatctgagatacgaaatcccgtcaaaagaagagaagtc-aatcccttcaa 5767055  T
Q  505 actcaacaaggagtcgatgaaatgtgaggtaagatgttccaaaccagtagtaacagtacctgtaatggataaagaagtcaatgttggtttctggcggaga 604  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  5767054 actcaacaaggagtcgatgaaatgtgaggtaagatgttccaaaccagtagtaacagtacatgtaatggataaagaagtcaatgttggtttctggaggaga 5766955  T
Q  605 gcaagat 611  Q
    |||||||    
T  5766954 gcaagat 5766948  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 298 - 343
Target Start/End: Complemental strand, 17627655 - 17627610
Alignment:
Q  298 tgatcattcaaaaaatcagcatattgaagatccaaatgttggatac 343  Q
    |||| ||||||||||| |||||| ||||||||||||||||||||||    
T  17627655 tgattattcaaaaaataagcatactgaagatccaaatgttggatac 17627610  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 264 - 338
Target Start/End: Complemental strand, 19468138 - 19468064
Alignment:
Q  264 atcaccaagaaacaaagacaactcagcaacacaatgatcattcaaaaaatcagcatattgaagatccaaatgttg 338  Q
    ||||||||||||||||||||||| | ||||| | ||||||||||||||  |||||  ||||||||||||||||||    
T  19468138 atcaccaagaaacaaagacaacttatcaacatagtgatcattcaaaaacccagcacgttgaagatccaaatgttg 19468064  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 237 - 464
Target Start/End: Complemental strand, 38267213 - 38266985
Alignment:
Q  237 acaattaccaaggttgatagagagcagatcaccaagaaacaaagacaactcagcaacacaatgatcattcaaaaaatcagcatattgaagatccaaatgt 336  Q
    ||||| || |||||| ||||| | ||||| |  |||||||||||||||||| ||||||   |||||| | | ||||||||  | |||||| |||||||||    
T  38267213 acaataactaaggtttatagacaccagatgaggaagaaacaaagacaactcggcaacatggtgatcagtgagaaaatcagtttcttgaaggtccaaatgt 38267114  T
Q  337 tggatacgtttcgacttagataacaaaaatga-gattccagaataagtatatccggggcaatagctgagtacaagcctcctcaaaggaagactttccatt 435  Q
    || ||||||    | |  ||||| |||||  | |||||||||  |||| || |||| |||||| | |||  |||| ||| ||||||||||||||| ||||    
T  38267113 tgtatacgtggacagtaggataaaaaaaagcaagattccagagaaagtgtagccggtgcaatatccgaggccaaggctcgtcaaaggaagactttgcatt 38267014  T
Q  436 gcaatggaggagaggaattgatctgagat 464  Q
    ||||| ||||| ||||| ||||| |||||    
T  38267013 gcaatagaggaaaggaagtgatcggagat 38266985  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 318 - 449
Target Start/End: Original strand, 641449 - 641580
Alignment:
Q  318 atattgaagatccaaatgttggatacgtttcgacttagataacaaaaatgagattccagaataagtatatccggggcaatagctgagtacaagcctcctc 417  Q
    |||||||||||||| |||||| | || |||   ||| ||||||||| |  ||||||||  ||||||||| |||| ||||| || ||| ||||| ||| ||    
T  641449 atattgaagatccagatgttgtaaacatttactcttggataacaaacacaagattccatcataagtatagccggtgcaattgcagaggacaagtctcgtc 641548  T
Q  418 aaaggaagactttccattgcaatggaggagag 449  Q
    |||||||| | || ||||||||| ||||||||    
T  641549 aaaggaaggcctttcattgcaatagaggagag 641580  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 342
Target Start/End: Original strand, 547382 - 547460
Alignment:
Q  264 atcaccaagaaacaaagacaactcagcaacacaatgatcattcaaaaaatcagcatattgaagatccaaatgttggata 342  Q
    ||||||||||||||||||||| |||  ||||   |||| | |||||||| |||||| ||||||||| ||||||||||||    
T  547382 atcaccaagaaacaaagacaagtcaagaacatgttgattagtcaaaaaaacagcattttgaagatctaaatgttggata 547460  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 344
Target Start/End: Complemental strand, 55908376 - 55908278
Alignment:
Q  246 aaggttgatagagagcagatcaccaagaaacaaagacaactcagcaacacaatgatcattcaaaaaatcagcatattgaagatccaaatgttggatacg 344  Q
    |||||| ||||| | || |||||||||||||||||||||||| || |||   |||||||||| |||    |||| |||||||||||||||||| |||||    
T  55908376 aaggtttatagacaccaaatcaccaagaaacaaagacaactctgcgacatcgtgatcattcataaacgtggcattttgaagatccaaatgttgtatacg 55908278  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 407 - 467
Target Start/End: Original strand, 1601013 - 1601073
Alignment:
Q  407 caagcctcctcaaaggaagactttccattgcaatggaggagaggaattgatctgagatacg 467  Q
    ||||||||||||||||| || ||||| ||||||| |||||||| || ||||| ||||||||    
T  1601013 caagcctcctcaaaggaggattttcctttgcaatagaggagagcaactgatccgagatacg 1601073  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 446
Target Start/End: Complemental strand, 3438226 - 3438101
Alignment:
Q  321 ttgaagatccaaatgttggatacgtttcgacttagataacaaaaatgagattccagaataagtatatccggggcaatagctgagtacaagcctcctcaaa 420  Q
    |||||||||||||||||| |||| ||   |||| ||||||| | |  ||||| ||| |||| |||| |||| ||||| |  ||| |||||||| ||||||    
T  3438226 ttgaagatccaaatgttgtatacattgacacttggataacagagaaaagatttcagcataactatagccggtgcaattgtggaggacaagccttctcaaa 3438127  T
Q  421 ggaagactttccattgcaatggagga 446  Q
    ||||||| | | |||||||| |||||    
T  3438126 ggaagacctccaattgcaatagagga 3438101  T

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Target: scaffold0262 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 268 - 338
Target Start/End: Original strand, 390 - 460
Alignment:
Q  268 ccaagaaacaaagacaactcagcaacacaatgatcattcaaaaaatcagcatattgaagatccaaatgttg 338  Q
    |||||||||||||||||||| ||||||  ||||||||||| |||    |||| ||||||||||||||||||    
T  390 ccaagaaacaaagacaactctgcaacatcatgatcattcataaacatggcattttgaagatccaaatgttg 460  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 344
Target Start/End: Complemental strand, 1037312 - 1037214
Alignment:
Q  246 aaggttgatagagagcagatcaccaagaaacaaagacaactcagcaacacaatgatcattcaaaaaatcagcatattgaagatccaaatgttggatacg 344  Q
    |||||| ||||| | || |||||||||||||||||||||||| || |||   |||||||||| |||    |||| |||||||||||||||||| |||||    
T  1037312 aaggtttatagacaccaaatcaccaagaaacaaagacaactctgcgacatcgtgatcattcataaacgtggcattttgaagatccaaatgttgtatacg 1037214  T

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