View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13409_low_4 (Length: 550)
Name: NF13409_low_4
Description: NF13409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13409_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 13 - 344
Target Start/End: Complemental strand, 6966466 - 6966135
Alignment:
| Q |
13 |
aacctgtggaatagcaagtgtaaagaagaaaaattaagttataaattcaaaagcctaagccnnnnnnnccgtccttctgcagattttaaactatgaatat |
112 |
Q |
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| T |
6966466 |
aacctgtggaatagcaagtgtaaagaagaaaaattaagttataaattcaaaagcctaagccattttttccgtccttctgcagattttaaactatgaatat |
6966367 |
T |
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| Q |
113 |
gcgatatggacattaaattctgacttttgctctcatattcttatgacatccaaatatcatgtcagagtaagattatagctatgcagaaaaaattcaaaac |
212 |
Q |
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| T |
6966366 |
gcgatatggacattaaattctgacttttgctctcatattctaatgacatccaaatatcatgtcagagtaagattatagctatgcagaaaaaattcaaaac |
6966267 |
T |
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| Q |
213 |
ttgaattccctccctttgccatcataccaacaattacactttgaaaacgaagtggaaaatctagactaaatacattgacaccgtggttttgttgaagcct |
312 |
Q |
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| T |
6966266 |
ttgaattccctccctttgccatcataccaacaattacactttgaaaatgaagtggaaaatctagattaaatacattgacaccgtggtattgttgaagcct |
6966167 |
T |
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| Q |
313 |
caaagtgtagtatattgtgattttgtcaaact |
344 |
Q |
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| T |
6966166 |
caaagtgtagtatattgtgattttgtcaaact |
6966135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 346 - 536
Target Start/End: Complemental strand, 6966062 - 6965874
Alignment:
| Q |
346 |
aaagaaaaaataatctgttctgtcctttccttaatcctactattgttccaaaatgtccaccgaattctatagcttttaggcaagtgattcggatggtgat |
445 |
Q |
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| T |
6966062 |
aaagaaaaaataatatgttctgtcctttccttaatcctactattgttccaaaatgtccaccgaattctagagcttttaggcaagtgattcggatggtgat |
6965963 |
T |
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| Q |
446 |
tgaattaacaatgttattaaatcctgactcaataaacacttaatatgagagtttatatataaattgtttctaccatagaagagaaaatgtg |
536 |
Q |
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| T |
6965962 |
tgaattaacaatgttattaaatcctga--caataaacacttaatatgagagtttatatataaattgtttctaccatagaagagaaaatgtg |
6965874 |
T |
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