View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13409_low_6 (Length: 439)

Name: NF13409_low_6
Description: NF13409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13409_low_6
NF13409_low_6
[»] chr6 (13 HSPs)
chr6 (16-421)||(6460744-6461149)
chr6 (16-421)||(6497523-6497928)
chr6 (83-394)||(6519560-6519871)
chr6 (83-250)||(6506507-6506674)
chr6 (84-242)||(6529228-6529386)
chr6 (84-244)||(6472031-6472191)
chr6 (83-242)||(6466362-6466521)
chr6 (156-233)||(7204172-7204249)
chr6 (156-233)||(7238923-7239000)
chr6 (94-258)||(6515090-6515254)
chr6 (325-392)||(6472284-6472351)
chr6 (138-223)||(6458424-6458509)
chr6 (359-421)||(6506324-6506386)
[»] chr7 (3 HSPs)
chr7 (83-257)||(9664290-9664464)
chr7 (129-223)||(3752864-3752958)
chr7 (129-250)||(4047253-4047374)
[»] chr4 (1 HSPs)
chr4 (83-257)||(13535314-13535488)


Alignment Details
Target: chr6 (Bit Score: 386; Significance: 0; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 16 - 421
Target Start/End: Original strand, 6460744 - 6461149
Alignment:
Q  16 atcaccaaaaatagatatttactatcaacaacaaaatgagctctccttttccaatgacagatccaagttccactgtcctccctgacccctccaaattctt 115  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  6460744 atcaccaaaaatagagatttactatcaacaacaaaatgagctctccttttccaatgatagatccaagttccactgtcctccctgacccctccaaattctt 6460843  T
Q  116 ctcttcaaatctgctatccaaaccactccctacaaactccttcttccaaaactttgttctcgacaatggtgaccaaccggaatactttcatccttacctc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6460844 ctcttcaaatctgctatccaaaccactccctacaaactccttcttccaaaactttgttctcgacaatggtgaccaaccggaatactttcatccttacctc 6460943  T
Q  216 atcaaatcttccaactcatctctttctgtctcatatccatctctttccatcagcccttctgctatatcccaagttttcactgctgatcttaccatcactt 315  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6460944 atcagatcttccaactcatctctttctgtctcatatccatctctttccatcagcccttctgctatatcccaagttttcactgctgatcttaccatcactt 6461043  T
Q  316 cctctacaaaaacttccaatgaaaaacatgtagtctcttactttagtgatctcagtgtcaccttagatatcccttcttccaacctcaccttcttccttgt 415  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  6461044 cctctacaaaaacttccaatgaaaaacatgtagtctcttcctttagtgatctcagtgtcaccttagatatcccttctgccaacctcaccttcttccttgt 6461143  T
Q  416 aagagg 421  Q
    ||||||    
T  6461144 aagagg 6461149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 16 - 421
Target Start/End: Complemental strand, 6497928 - 6497523
Alignment:
Q  16 atcaccaaaaatagatatttactatcaacaacaaaatgagctctccttttccaatgacagatccaagttccactgtcctccctgacccctccaaattctt 115  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |  |||| |||||||||||||||||    
T  6497928 atcaccaaaaatagagatttactatcaacaacaaaatgagctctccttttccaatgacagattcaagttcaactattatcccagacccctccaaattctt 6497829  T
Q  116 ctcttcaaatctgctatccaaaccactccctacaaactccttcttccaaaactttgttctcgacaatggtgaccaaccggaatactttcatccttacctc 215  Q
    ||||  |||||||||||| ||||| ||||| |||||||| ||||||||||||||||||||| |||| ||||||||||| ||||| |||||||||||||||    
T  6497828 ctctaaaaatctgctatctaaacccctccccacaaactctttcttccaaaactttgttctcaacaacggtgaccaacctgaatattttcatccttacctc 6497729  T
Q  216 atcaaatcttccaactcatctctttctgtctcatatccatctctttccatcagcccttctgctatatcccaagttttcactgctgatcttaccatcactt 315  Q
    |||||||| ||  ||||||| |||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6497728 atcaaatcatcagactcatcactttctgtttcatatccatctatttccatcagcccttctgctatatctcaagttttcactgctgatcttaccatcactt 6497629  T
Q  316 cctctacaaaaacttccaatgaaaaacatgtagtctcttactttagtgatctcagtgtcaccttagatatcccttcttccaacctcaccttcttccttgt 415  Q
    || |||| |||||||||||||||||||||||||| ||||  |||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||    
T  6497628 ccgctacgaaaacttccaatgaaaaacatgtagtatcttcttttagtgatctcggtgtcaccttagatatcccttcttcaaatctcaccttcttccttgt 6497529  T
Q  416 aagagg 421  Q
    ||||||    
T  6497528 aagagg 6497523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 83 - 394
Target Start/End: Original strand, 6519560 - 6519871
Alignment:
Q  83 ttccactgtcctccctgacccctccaaattcttctcttcaaatctgctatccaaaccactccctacaaactccttcttccaaaactttgttctcgacaat 182  Q
    ||||||||||| ||||||||||||||||||||||||| ||||| | ||||||||||| |||||||||||||| ||||||||||||||||||||| | ||     
T  6519560 ttccactgtccaccctgacccctccaaattcttctctccaaatttactatccaaacccctccctacaaactctttcttccaaaactttgttctcaaaaac 6519659  T
Q  183 ggtgaccaaccggaatactttcatccttacctcatcaaatcttccaactcatctctttctgtctcatatccatctctttccatcagcccttctgctatat 282  Q
    ||||||||||| |||||  ||||||| |||||||| ||||| || |||||||| |||||||| || || ||||| | || | | | | |||||| |||||    
T  6519660 ggtgaccaacctgaatatattcatccatacctcattaaatcatcaaactcatcactttctgtttcttacccatcacgtttcttaaactcttctgttatat 6519759  T
Q  283 cccaagttttcactgctgatcttaccatcacttcctctacaaaaacttccaatgaaaaacatgtagtctcttactttagtgatctcagtgtcaccttaga 382  Q
    |||||||||||| ||||||||||||||| ||||| ||||||||||||||||| ||||||||  || ||||||  |  | ||| |||||||| ||||| ||    
T  6519760 cccaagttttcaatgctgatcttaccataacttcttctacaaaaacttccaacgaaaaacacataatctcttcttacaatgacctcagtgttaccttgga 6519859  T
Q  383 tatcccttcttc 394  Q
     |||||||||||    
T  6519860 aatcccttcttc 6519871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 83 - 250
Target Start/End: Complemental strand, 6506674 - 6506507
Alignment:
Q  83 ttccactgtcctccctgacccctccaaattcttctcttcaaatctgctatccaaaccactccctacaaactccttcttccaaaactttgttctcgacaat 182  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| || ||||||||||| ||||||||||||||||||||| |||||    
T  6506674 ttccactgtcctccctgacccctccaaattcttctctccaaatctgctatccacacccctgcctacaaactctttcttccaaaactttgttctcaacaat 6506575  T
Q  183 ggtgaccaaccggaatactttcatccttacctcatcaaatcttccaactcatctctttctgtctcata 250  Q
    |||||   ||| ||||||||||||||||||||||||||||| || |||||||| ||||||||||||||    
T  6506574 ggtgatgcacctgaatactttcatccttacctcatcaaatcatcaaactcatcactttctgtctcata 6506507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 84 - 242
Target Start/End: Complemental strand, 6529386 - 6529228
Alignment:
Q  84 tccactgtcctccctgacccctccaaattcttctcttcaaatctgctatccaaaccactccctacaaactccttcttccaaaactttgttctcgacaatg 183  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||| ||||||    
T  6529386 tccactgtccttcctgacccctccaaattcttctctccaaatctgctatccacacccctccctacaaactctttcttccaaaactttgttctcaacaatg 6529287  T
Q  184 gtgaccaaccggaatactttcatccttacctcatcaaatcttccaactcatctctttct 242  Q
    |||||||||| |||||| ||||||| || ||||||||||||||  ||||||| ||||||    
T  6529286 gtgaccaacctgaatacattcatccatatctcatcaaatcttcagactcatcactttct 6529228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 84 - 244
Target Start/End: Original strand, 6472031 - 6472191
Alignment:
Q  84 tccactgtcctccctgacccctccaaattcttctcttcaaatctgctatccaaaccactccctacaaactccttcttccaaaactttgttctcgacaatg 183  Q
    |||||||| ||||||||||||||||||||||||||  ||||| ||||||||| ||| |||||||||||||| |||||||||||| |||| ||  | ||||    
T  6472031 tccactgttctccctgacccctccaaattcttctcaccaaatttgctatccacacccctccctacaaactctttcttccaaaacattgtcctaaaaaatg 6472130  T
Q  184 gtgaccaaccggaatactttcatccttacctcatcaaatcttccaactcatctctttctgt 244  Q
    |||||||||| |||||| |||||||||||||||||||||| || |||||||| ||||||||    
T  6472131 gtgaccaacctgaatacattcatccttacctcatcaaatcatcaaactcatcactttctgt 6472191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 83 - 242
Target Start/End: Complemental strand, 6466521 - 6466362
Alignment:
Q  83 ttccactgtcctccctgacccctccaaattcttctcttcaaatctgctatccaaaccactccctacaaactccttcttccaaaactttgttctcgacaat 182  Q
    |||||| ||||||||||||||| | || ||||||||| ||||||||||||||| ||| ||||| |||||||| ||||||||||||||||||||| | |||    
T  6466521 ttccacggtcctccctgaccccacaaacttcttctctccaaatctgctatccacacccctccccacaaactctttcttccaaaactttgttctcaaaaat 6466422  T
Q  183 ggtgaccaaccggaatactttcatccttacctcatcaaatcttccaactcatctctttct 242  Q
    ||||||||||| |||||| ||||||| || |||||||||||||| |||||||| ||||||    
T  6466421 ggtgaccaacctgaatacattcatccatatctcatcaaatcttcaaactcatcactttct 6466362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 156 - 233
Target Start/End: Original strand, 7204172 - 7204249
Alignment:
Q  156 ttcttccaaaactttgttctcgacaatggtgaccaaccggaatactttcatccttacctcatcaaatcttccaactca 233  Q
    |||||||||||||||||||||  ||||||||||||||| |||||| ||||||| |||||||| ||||| || ||||||    
T  7204172 ttcttccaaaactttgttctcatcaatggtgaccaacctgaatacattcatccctacctcattaaatcatcgaactca 7204249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 156 - 233
Target Start/End: Original strand, 7238923 - 7239000
Alignment:
Q  156 ttcttccaaaactttgttctcgacaatggtgaccaaccggaatactttcatccttacctcatcaaatcttccaactca 233  Q
    |||||||||||||||||||||  ||||||||||||||| |||||| ||||||| |||||||| ||||| || ||||||    
T  7238923 ttcttccaaaactttgttctcatcaatggtgaccaacctgaatacattcatccctacctcattaaatcatcgaactca 7239000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 94 - 258
Target Start/End: Original strand, 6515090 - 6515254
Alignment:
Q  94 tccctgacccctccaaattcttctcttcaaatctgctatccaaaccactccctacaaactccttcttccaaaactttgttctcgacaatggtgaccaacc 193  Q
    ||||||| |||||||| ||||||||  ||||||| ||||| | ||| ||||| |||||||| |||||||||||||||  ||||    | |||||   |||    
T  6515090 tccctgatccctccaagttcttctccccaaatcttctatctacacccctccccacaaactctttcttccaaaacttttctctcagagagggtgaaacacc 6515189  T
Q  194 ggaatactttcatccttacctcatcaaatcttccaactcatctctttctgtctcatatccatctc 258  Q
     |||||| | |||||||||||||||| |||  | |||||||| |||||| | ||||| |||||||    
T  6515190 tgaatacatccatccttacctcatcagatcaacaaactcatcactttctttttcatacccatctc 6515254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 325 - 392
Target Start/End: Original strand, 6472284 - 6472351
Alignment:
Q  325 aaacttccaatgaaaaacatgtagtctcttactttagtgatctcagtgtcaccttagatatcccttct 392  Q
    |||||||||||||||||||  ||||||||| || ||||||||||||||||||||| || || ||||||    
T  6472284 aaacttccaatgaaaaacacatagtctcttcctatagtgatctcagtgtcaccttggacatgccttct 6472351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 138 - 223
Target Start/End: Complemental strand, 6458509 - 6458424
Alignment:
Q  138 ccactccctacaaactccttcttccaaaactttgttctcgacaatggtgaccaaccggaatactttcatccttacctcatcaaatc 223  Q
    |||||||| |||||||| ||||||||||| ||||||||  | |||||||||  ||| || ||| |||| |||||||||||||||||    
T  6458509 ccactcccaacaaactctttcttccaaaattttgttctacaaaatggtgacacacctgagtacattcacccttacctcatcaaatc 6458424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 421
Target Start/End: Complemental strand, 6506386 - 6506324
Alignment:
Q  359 tagtgatctcagtgtcaccttagatatcccttcttccaacctcaccttcttccttgtaagagg 421  Q
    |||||||||| |||| |||||||||||||||||||| || ||||  ||||| ||||| |||||    
T  6506386 tagtgatctcggtgttaccttagatatcccttcttcaaatctcagtttctttcttgttagagg 6506324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 5e-32; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 83 - 257
Target Start/End: Original strand, 9664290 - 9664464
Alignment:
Q  83 ttccactgtcctccctgacccctccaaattcttctcttcaaatctgctatccaaaccactccctacaaactccttcttccaaaactttgttctcgacaat 182  Q
    ||||||| ||||||| || || ||||| ||||||||| ||||||| ||||| | ||| |||||||||||||| ||||||||||||||||||||| | |||    
T  9664290 ttccactctcctccccgaaccttccaatttcttctctccaaatcttctatctacacccctccctacaaactctttcttccaaaactttgttctcaaaaat 9664389  T
Q  183 ggtgaccaaccggaatactttcatccttacctcatcaaatcttccaactcatctctttctgtctcatatccatct 257  Q
    |||||||||   |||||| |||| ||||| ||| ||||||| || |||||||| |||||| | || |||||||||    
T  9664390 ggtgaccaatatgaatacattcacccttatctcgtcaaatcgtcgaactcatcactttctctttcgtatccatct 9664464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 3752864 - 3752958
Alignment:
Q  129 ctatccaaaccactccctacaaactccttcttccaaaactttgttctcgacaatggtgaccaaccggaatactttcatccttacctcatcaaatc 223  Q
    ||||||| ||| |||||||||||||| ||||||||||||||||||||| |||||||||||  ||| |||||| |||| |||||||||||||||||    
T  3752864 ctatccacacccctccctacaaactctttcttccaaaactttgttctccacaatggtgacacacctgaatacattcacccttacctcatcaaatc 3752958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 129 - 250
Target Start/End: Complemental strand, 4047374 - 4047253
Alignment:
Q  129 ctatccaaaccactccctacaaactccttcttccaaaactttgttctcgacaatggtgaccaaccggaatactttcatccttacctcatcaaatcttcca 228  Q
    ||||||| ||| |||||||||||||| ||||||||||| ||||||||  | |||||||| ||||  |||||| |||| ||||||||  ||||||| || |    
T  4047374 ctatccacacctctccctacaaactcattcttccaaaattttgttctacaaaatggtgatcaacatgaatacattcacccttaccttgtcaaatcctcaa 4047275  T
Q  229 actcatctctttctgtctcata 250  Q
    |||| || || ||||| |||||    
T  4047274 actcttccctatctgtttcata 4047253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 83 - 257
Target Start/End: Original strand, 13535314 - 13535488
Alignment:
Q  83 ttccactgtcctccctgacccctccaaattcttctcttcaaatctgctatccaaaccactccctacaaactccttcttccaaaactttgttctcgacaat 182  Q
    ||||||| ||||||| || || ||||| ||||||||| ||||||| ||||| | ||| |||||||||||||| ||||||||||||||||||||| | |||    
T  13535314 ttccactctcctccccgaaccttccaatttcttctctccaaatcttctatctacacccctccctacaaactctttcttccaaaactttgttctcaaaaat 13535413  T
Q  183 ggtgaccaaccggaatactttcatccttacctcatcaaatcttccaactcatctctttctgtctcatatccatct 257  Q
    |||||||||   |||||| |||| ||||| ||| ||||||| || |||||||| |||||| | || |||||||||    
T  13535414 ggtgaccaatatgaatacattcacccttatctcgtcaaatcgtcgaactcatcactttctctttcgtatccatct 13535488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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