View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13409_low_7 (Length: 430)
Name: NF13409_low_7
Description: NF13409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13409_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 6 - 345
Target Start/End: Complemental strand, 45098150 - 45097807
Alignment:
| Q |
6 |
atttcataattagtgtcacatttaggggggaaaagaaaatgtcttgnnnnnnntgacattttcaatataatatttattatcttttttcagttgtacccct |
105 |
Q |
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| T |
45098150 |
atttcataattagtgtcacatttagggggggaaagaaaatgtcttgaaaaaaatgacattttcaatataatatttattatcttttttcagttgtacccct |
45098051 |
T |
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| Q |
106 |
aatttgtaatatactactagacatcattttcaagtcaatgcattctacttttgcat----ctatgataatattaatatacaccaataataagattagtgt |
201 |
Q |
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| T |
45098050 |
aatttgtaatatactactagacatcattttcaagtcaatgtattctacttttgcatgcatctatgataatattaatatacaccaataataagattaatgt |
45097951 |
T |
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| Q |
202 |
aatatatagtaagctagtgtgataattattgtgggaaaaagggagcaagatattatctaatatactcacataacaaatcacaaaagtcagttacatatgc |
301 |
Q |
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| T |
45097950 |
aatatatagtaagctagtgtgataattattgtgggaaaaagggagcaagatattatctaatatactcacataacaaatcacaaaagtcagttacatatgc |
45097851 |
T |
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| Q |
302 |
aatgtatctatcccaacatcatgacgagtaaccatattaattct |
345 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45097850 |
aatgtatctatcccaacatcatgacgagtaaccatattaattct |
45097807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 376 - 422
Target Start/End: Complemental strand, 45097789 - 45097743
Alignment:
| Q |
376 |
tgaggcttaacgagtctcttgacttgtggttgtgggtattgatgatg |
422 |
Q |
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| T |
45097789 |
tgaggcttaacgagtctcttgacttgtggttgtgggtattgatgatg |
45097743 |
T |
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