View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1340_low_1 (Length: 891)
Name: NF1340_low_1
Description: NF1340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1340_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 707; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 707; E-Value: 0
Query Start/End: Original strand, 96 - 843
Target Start/End: Complemental strand, 43802935 - 43802188
Alignment:
| Q |
96 |
aatagcatatgctaatattaatacagacatgagacaagcacctaagtagtactacaactttctattagttcagaccttgaactaaaataaacttgattgg |
195 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43802935 |
aatagcatatgctaatattaatacagacatgagacaagcacctaagtagtactacaactttctattagttcagaccttgaactaaaataaacttgattgg |
43802836 |
T |
|
| Q |
196 |
tcatgttgcttccccatgaaggcgatatgttggcactgcaagcaagtgtttggctcttggggttgagagaccaaacttttcagtcatgtctaaatcattt |
295 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43802835 |
tcacgttgcttccccatgaaggcgatatgttggcactgcaagcaagtgtttggctcttggggttgagagaccaaacttttcagtcatgtctaaatcattt |
43802736 |
T |
|
| Q |
296 |
ggagtcatattcgagggaagctcccaagaaaagcaatgtaccaattgagcaacaacaagtttaactgtagttagtcccaagtttattccaggacatcctc |
395 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43802735 |
ggagtcatattcgagggaagctcccaagtaaagcaatgtaccaattgagcaacaacaagtttaactgtagttagtcccaagtttattccaggacatcctc |
43802636 |
T |
|
| Q |
396 |
ttcgaccaaaaccaaatggtataaattggaaatcatgtccgcggtagtctaaacttttatccacgaatctctctggaaaaaattcttcagcattattaga |
495 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
43802635 |
ttcgaccaaaaccaaatggtataaattggaaatcatgtccgcggtagtctaaacttttatccacgaatctctccggaaaaaattcttcagcattattaga |
43802536 |
T |
|
| Q |
496 |
ccagatcgcagaatctcttcctattgcccataaattcaaaattattcttgnnnnnnnctttatgaaataaccatgcactgtagaatcttgtgttgactcg |
595 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43802535 |
ccagatcgcagaatctcttcctattgcccataaattcaaaattattcttgtttttttctttatgaaataaccatgcactgtagaatcttgtgttgactcg |
43802436 |
T |
|
| Q |
596 |
cgtggcacaagtggtcccggagggtataatcttaaggtctccatgatcacaatatccaagtaacttaactttgacaaatcattttcttctactaatttct |
695 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
43802435 |
cgtggcacaagtggtcccggagggtataatcttaaggtctccatgatcacaatatccaagtaacttaactttgacaaatcattttcttctactaatttgt |
43802336 |
T |
|
| Q |
696 |
tcgccccaaccacgttatctagctcttgttggagatttttcatcactcttggatgcctcatgagctctgataaagcccactccacaactgttgcggaagt |
795 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
43802335 |
tcgccccaaccacgttatctagctcttgttggagatttttcatcactcttggatgcctcatgagctctgataaagcccactccacaaccgttgcggaagt |
43802236 |
T |
|
| Q |
796 |
ttcaaatgccccggcaatcatgtctagggatatagcctttatgtttgt |
843 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43802235 |
ttcaaatgccccggcaatcatgtctagggatatagcctttatgtttgt |
43802188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 140 - 843
Target Start/End: Complemental strand, 43813460 - 43812757
Alignment:
| Q |
140 |
agtagtactacaactttctattagttcagaccttgaactaaaataaacttgattggtcatgttgcttccccatgaaggcgatatgttggcactgcaagca |
239 |
Q |
| |
|
||||||| ||||||||| ||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43813460 |
agtagtagtacaactttacattagttcaatccttgaactaaagcaaacttaattggtcatgttgcttccccatgaaggcgatatgttggcactgcaagca |
43813361 |
T |
|
| Q |
240 |
agtgtttggctcttggggttgagagaccaaacttttcagtcatgtctaaatcatttggagtcatattcgagggaagctcccaagaaaagcaatgtaccaa |
339 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||| ||| |
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| T |
43813360 |
agtgtttggctcttgggattgagagaccaaacttttcagtcatgtctaaatcatttatagtcatatttgagggaagcttccaagaaaagcaatgtatcaa |
43813261 |
T |
|
| Q |
340 |
ttgagcaacaacaagtttaactgtagttagtcccaagtttattccaggacatcctcttcgaccaaaaccaaatggtataaattggaaatcatgtccgcgg |
439 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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|
| T |
43813260 |
ttgagcaacaacaagtttaactgtagctagtcccaagtttattccaggacatcctcttcgaccgaaaccaaatggtataaattggaaatcatgtccacgg |
43813161 |
T |
|
| Q |
440 |
tagtctaaacttttatccacgaatctctctggaaaaaattcttcagcattattagaccagatcgcagaatctcttcctattgcccataaattcaaaatta |
539 |
Q |
| |
|
||||| || |||||||||| |||||||||||| |||||||||| |||||||||||||| ||| ||||||||||||||||||||| ||||||| ||||| |
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|
| T |
43813160 |
tagtcgaagtttttatccacaaatctctctggataaaattcttcggcattattagaccatatcttagaatctcttcctattgcccacaaattcacaatta |
43813061 |
T |
|
| Q |
540 |
ttcttgnnnnnnnctttatgaaataaccatgcactgtagaatcttgtgttgactcgcgtggcacaagtggtcccggagggtataatcttaaggtctccat |
639 |
Q |
| |
|
||||| |||||||||||||||||| ||||||| ||| | |||||||||||| |||||||||||||| | ||| |||||||||||||||||||| |
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|
| T |
43813060 |
ctcttgtttttttctttatgaaataaccatgaactgtagcatcctctgttgactcgcgcggcacaagtggtcctgcaggatataatcttaaggtctccat |
43812961 |
T |
|
| Q |
640 |
gatcacaatatccaagtaacttaactttgacaaatcattttcttctactaatttcttcgccccaaccacgttatctagctcttgttggagatttttcatc |
739 |
Q |
| |
|
|||||||||||| |||||||||||||||| || |||||| || || |||||||| ||| |||||| || |||| ||||||||||||||||||||||| |
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| T |
43812960 |
gatcacaatatctaagtaacttaactttgccatatcattctcctccactaatttgttcatcccaactacactatccagctcttgttggagatttttcatt |
43812861 |
T |
|
| Q |
740 |
actcttggatgcctcatgagctctgataaagcccactccacaactgttgcggaagtttcaaatgccccggcaatcatgtctagggatatagcctttatgt |
839 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||| ||||||||| |||| |||||||||| || |||||||||||||| |
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|
| T |
43812860 |
actcttggatgcctcatgagctcggataaagcccactccacaatggttgcagaagtgtcaaatgccgcggcgatcatgtctaaggctatagcctttatgt |
43812761 |
T |
|
| Q |
840 |
ttgt |
843 |
Q |
| |
|
|||| |
|
|
| T |
43812760 |
ttgt |
43812757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 4e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 223 - 435
Target Start/End: Original strand, 31950331 - 31950543
Alignment:
| Q |
223 |
tgttggcactgcaagcaagtgtttggctcttggggttgagagaccaaacttttcagtcatgtctaaatcatttggagtcatattcgagggaagctcccaa |
322 |
Q |
| |
|
||||||||| || |||||||| || |||||| ||||||| ||||| |||||| |||| || |||||||| |||| |||| ||||||| |||||| |
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|
| T |
31950331 |
tgttggcacagctagcaagtggttaaatcttggcattgagagtccaaatttttcactcatatccaaatcattaggagacataccaaagggaagttcccaa |
31950430 |
T |
|
| Q |
323 |
gaaaagcaatgtaccaattgagcaacaacaagtttaactgtagttagtcccaagtt-tattccaggacatcctcttcgaccaaaaccaaatggtataaat |
421 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||| ||| |||| ||| |||| |||||||| || ||||| ||||| | ||||||||||||| | |
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|
| T |
31950431 |
tcaaagcaatgtaccaattgggcaacaacaagcctaacagtatttag-ccctagttgaattccagggcaccctctacgacccgacccaaatggtataagt |
31950529 |
T |
|
| Q |
422 |
tggaaatcatgtcc |
435 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
31950530 |
tgaaaatcatgtcc |
31950543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 380 - 435
Target Start/End: Complemental strand, 31890783 - 31890728
Alignment:
| Q |
380 |
attccaggacatcctcttcgaccaaaaccaaatggtataaattggaaatcatgtcc |
435 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||| | ||| ||||||||||| |
|
|
| T |
31890783 |
attccaggacaacttcttcgaccaaaaccaaatggtatgagttgaaaatcatgtcc |
31890728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 728 - 777
Target Start/End: Complemental strand, 29944776 - 29944727
Alignment:
| Q |
728 |
agatttttcatcactcttggatgcctcatgagctctgataaagcccactc |
777 |
Q |
| |
|
|||||||||||||||||||||||||| | || || |||||||||||||| |
|
|
| T |
29944776 |
agatttttcatcactcttggatgccttaaaagttcggataaagcccactc |
29944727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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