View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1340_low_18 (Length: 249)
Name: NF1340_low_18
Description: NF1340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1340_low_18 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 10 - 249
Target Start/End: Original strand, 6011659 - 6011904
Alignment:
| Q |
10 |
atgaagatctattgtctttgaatttatcttaagatcaattttgacttatgcatgctaataattcctcgagccttaattataagcaaatataaataaacaa |
109 |
Q |
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| T |
6011659 |
atgaaaatctattgtctttgaatttatcttcagatcaattttgacttatgcatgctaataattcctcgagtcttaattataagcaaatataaataaacaa |
6011758 |
T |
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| Q |
110 |
attgatgtatttattcaaaatttagatcaaatacatcaacnnnnnnnaacctacttttatttatgattaagatcaaaaggagtattgactaaaagtggtc |
209 |
Q |
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| T |
6011759 |
attgatgtatttattcaaaatttagatcaaatacatcaactttttttaacctacttttatttatgattaagatcaaaaggaatattgactaaaagtggtc |
6011858 |
T |
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| Q |
210 |
tc------gctggtgccatcaccaatagcactgaatccaaaatata |
249 |
Q |
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| T |
6011859 |
tcaatattgctggtgccatcactaatagcactgaatccaaaatata |
6011904 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 148
Target Start/End: Original strand, 42704474 - 42704514
Alignment:
| Q |
108 |
aaattgatgtatttattcaaaatttagatcaaatacatcaa |
148 |
Q |
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| T |
42704474 |
aaattgatgtgtttattccaaatttagattaaatacatcaa |
42704514 |
T |
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