View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1340_low_4 (Length: 716)
Name: NF1340_low_4
Description: NF1340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1340_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 410; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 29 - 602
Target Start/End: Original strand, 11129431 - 11130005
Alignment:
| Q |
29 |
atgaatatcataagtaataaagctcttgtgggagaaaatatgatgccacaaatcaagtcttaagtccatgactttagttttttcacacattcacacagcc |
128 |
Q |
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| T |
11129431 |
atgaatatcataagtaataaagctcttgtgggagaaaatatgatgccacaaatcaagtcttaagtccatgactttagttttttcacacattcacacaacc |
11129530 |
T |
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| Q |
129 |
atgacttcagtgatcgtctgattaagattgaacagtccatnnnnnnntaaatttgannnnnnnn-cttaaaataccaaatttaaaatcatgattgtccga |
227 |
Q |
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| T |
11129531 |
atgactttagtggtcgtctgatcaagattggacagtccgtaaaaaa-taaatttgatttttttttcttaaaataccaaatttaaaagcatgatcgtccga |
11129629 |
T |
|
| Q |
228 |
tcttgatcaaacgaacattaacgtatgactgcataatttgttaactgcatcaaatcgtggtctaaagaaaatgggcatagttccatcggg-tattttcaa |
326 |
Q |
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| T |
11129630 |
tcttgatcaaacgatcattaacatatgactgcgtgatttgttaaccgtattaaatcgtggtctaaagaaaatgggtatagttccatcggggtatttccaa |
11129729 |
T |
|
| Q |
327 |
ttccttccttgataaaattccaatcaaaactaaagtatttggcctaatactccaaacaaataatactagatcaaaatacaatatcttcatcacaatctct |
426 |
Q |
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| T |
11129730 |
ttccttccttggtaaaattccaatcaaaactaaagtatttggcctaatactccaagcaaataatactagatcaaaatacaatatctttatcacaatctct |
11129829 |
T |
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| Q |
427 |
caaaatataagtaatggattcataagcattatcacaacaaatcattagtataatcatatttctcttacatctttctattcattagtcaattatttaccat |
526 |
Q |
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| T |
11129830 |
caaaatataagtaatggattcataagcattatcacaacaaatcattggtataatcatgtttctcttacatctttctattcattagtcaattatttaccat |
11129929 |
T |
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| Q |
527 |
gaatgagttttaggacctgagtcctgaccactccaagccaacataatattttgattaaaagcattatttgactcca |
602 |
Q |
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| T |
11129930 |
gaatgagttttagcacctgagtcctgaccactccaagcacacataatattttgattaaaagcattatttgactcca |
11130005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 399 - 536
Target Start/End: Original strand, 11124790 - 11124932
Alignment:
| Q |
399 |
aaaatacaatatcttcatcacaatctctcaaaatataagtaatggattcataagcattatcacaac-----aaatcattagtataatcatatttctctta |
493 |
Q |
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| T |
11124790 |
aaaaaacaatatcttattcacaatctctcaaaatatgcataatggattcagaagcattatcacaaggacaaaaatcattagtataatcatgtttctctta |
11124889 |
T |
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| Q |
494 |
catctttctattcattagtcaattatttaccatgaatgagttt |
536 |
Q |
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| T |
11124890 |
catctctccattcattagtcagttatttaccatgcatgagttt |
11124932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 634 - 710
Target Start/End: Original strand, 11130026 - 11130102
Alignment:
| Q |
634 |
tattttcatcaaagatttgactccatttgatggagaataagtccaatttcctaaatcattttcatcattcatatcag |
710 |
Q |
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| T |
11130026 |
tattttcatcaaagatttgactccatttgatgaagaagaagtccaatttcctaaatcattttcatcattcatatcag |
11130102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 252 - 413
Target Start/End: Original strand, 11124470 - 11124649
Alignment:
| Q |
252 |
atgactgcataatttgttaactgcatcaaatcgtggtctaaagaaaatgggcatagttccatcgggtattttcaattccttccttgataaaattccaatc |
351 |
Q |
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|||| ||| |||||||||||||||| |||||| ||||| ||||||||| | ||||||||||| ||||||| |||||||||||| | ||||||||||||| |
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| T |
11124470 |
atgattgcgtaatttgttaactgcaacaaatcttggtcgaaagaaaatagacatagttccatgaggtatttccaattccttcctcggtaaaattccaatc |
11124569 |
T |
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| Q |
352 |
aa------------------aactaaagtatttggcctaatactccaaacaaataatactagatcaaaatacaatatctt |
413 |
Q |
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| T |
11124570 |
aatccaagcatgtaaaccaaaactaaagtatttggcctactactccaaacaaatagtactagatcaaaatacaatatctt |
11124649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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