View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1340_low_5 (Length: 592)
Name: NF1340_low_5
Description: NF1340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1340_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 1382532 - 1382254
Alignment:
| Q |
1 |
tgactcatgttattcacaatataannnnnnnn-attttgtatagattgacctgtctaccaaatattctattgcggacacactgcagcagagttgctttgt |
99 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1382532 |
tgactcatgttattcacaatataatttttttttattttgtatagattgacctgtctaccaaatattctattgcggacacactgcagcagagttgctttat |
1382433 |
T |
|
| Q |
100 |
gcaaaaagaaaaacataaggtttctcttctcccttgtccagaaaatgttgaatatcttactgttagaagaggacaaattagaagttttgtttgatgtttg |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
1382432 |
gcaaaaagaaaaacataaggtttctcttctcccttgtccagaaaatgttgaatatcttactgttagaagaggacaaattagaagttttattttatgtttg |
1382333 |
T |
|
| Q |
200 |
gtgtgtattaaaagtagtagactag-aacatctagttccattttgcctgtttgccaagtgttgcctatgtagatgtaga |
277 |
Q |
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| T |
1382332 |
gtgtgtattaaaagttgtagactagtaacatctagttccattttgcctgtttgccaagtgttacctatgtagatgtaga |
1382254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 394 - 584
Target Start/End: Complemental strand, 1382225 - 1382037
Alignment:
| Q |
394 |
tacagtagatttagcaaagtagaagtattttatttagtttgatgcacaagtgacagcacttttattaaggaaatgtttctattgaatacttctaacaaat |
493 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| || |||||||||||| |
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| T |
1382225 |
tacagtagatttagcaaagtagaagtattttatttagtttgatgcacaagagacagcacttttattaaggaaatgtttatatttaacgcttctaacaaat |
1382126 |
T |
|
| Q |
494 |
tggctatatttgatgttaaaacaagtaaattannnnnnnnncccattagttttgggttttgtgaataagaagaaactattatatattattc |
584 |
Q |
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| T |
1382125 |
tggctttatttgatgttaaaacaagtaaattaatttttttt--cattagttttgggttttgtgaataagaagaaactattatatattattc |
1382037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 37 - 215
Target Start/End: Complemental strand, 7317143 - 7316962
Alignment:
| Q |
37 |
tgtatagattgacctgtctaccaaatattctattgcggacacactgcagcagagttgctttgtgcaaa---aagaaaaacataaggtttctcttctccct |
133 |
Q |
| |
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||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||| |||||||||| |
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| T |
7317143 |
tgtatagattgacctatcttccaaatattctattgcggacacactgcagcagagttgctttaaatttatgcaagaaaatcataaggtttatcttctccct |
7317044 |
T |
|
| Q |
134 |
tgtccagaaaatgttgaatatcttactgttagaagaggacaaattagaagttttgtttgatgtttggtgtgtattaaaagta |
215 |
Q |
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| T |
7317043 |
tgtccagaaaatgttgaatatcttactgttagaacaggacaaattagaagttttgtttgatgtttggtgtgtattaaaagta |
7316962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 293 - 433
Target Start/End: Complemental strand, 7316927 - 7316787
Alignment:
| Q |
293 |
tgtagaaatatcataagttggcataattagcatatatctgctccttgcttagtactagaccggagacatacaataatacaaacatggatacatggcacaa |
392 |
Q |
| |
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||||||||||| |||||||||||||||||| |||||||| || ||||||| |||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
7316927 |
tgtagaaatattataagttggcataattagaatatatctactgcttgctttgtactagaccggagacatacaataatacaatcaaggatacatggcacaa |
7316828 |
T |
|
| Q |
393 |
atacagtagatttagcaaagtagaagtattttatttagttt |
433 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||| |
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| T |
7316827 |
atacagtagagttagcaaagtagaagtattttatttagttt |
7316787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 454 - 584
Target Start/End: Complemental strand, 7315685 - 7315556
Alignment:
| Q |
454 |
tttattaaggaaatgtttctattgaatacttctaacaaattggctatatttgatgttaaaacaagtaaattannnnnnnnncccattagttttgggtttt |
553 |
Q |
| |
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|||||||||||||||||| | ||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
7315685 |
tttattaaggaaatgtttgtgttgaacgcttctaacaaattggctatatttggtgttaaaacaagtaaattaatttttttt-tcattagttttgggtttt |
7315587 |
T |
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| Q |
554 |
gtgaataagaagaaactattatatattattc |
584 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
7315586 |
gtgaataagaagaaactattatatattattc |
7315556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 429
Target Start/End: Complemental strand, 7880646 - 7880509
Alignment:
| Q |
289 |
tagatgtagaaatatcataagttggcataattagcatatatctgctccttgcttagtactagaccggagacatacaataatacaaacatggatacatggc |
388 |
Q |
| |
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||||||||||||| ||||||||||| ||||| || | |||| || | ||||||| || |||||| || | |||||||| ||| |||| || || || |
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| T |
7880646 |
tagatgtagaaatctcataagttggaataataagaaaatatatgttgcttgctttgtgttagaccagacatatacaata---caatcatgaatttatagc |
7880550 |
T |
|
| Q |
389 |
acaaatacagtagatttagcaaagtagaagtattttattta |
429 |
Q |
| |
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||||||||| |||||||||| | ||||||||||||||||| |
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| T |
7880549 |
acaaatacaacagatttagcatactagaagtattttattta |
7880509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 232 - 433
Target Start/End: Complemental strand, 29378973 - 29378772
Alignment:
| Q |
232 |
agttccattttgcctgtttgccaagtgttgcctatgtagatgtagatgttgcccatttagatgtagaaatatcataagttggcataattagcatatatct |
331 |
Q |
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||||||| ||||||| | | ||||||||| |||||||||||||||||||| ||||| ||||||| || | |||||||||||||||||||| ||||| || |
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| T |
29378973 |
agttccagtttgcctctgttccaagtgttacctatgtagatgtagatgttacccatgtagatgtgaaattctcataagttggcataattagaatataact |
29378874 |
T |
|
| Q |
332 |
gctccttgcttagtactagaccggagacatacaataatacaaacatggatacatggcacaaatacagtagatttagcaaagtagaagtattttatttagt |
431 |
Q |
| |
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|| |||||| ||||| | || |||| |||||||||||||| | ||||||||| |||||||||| ||||||||| ||||||||||| ||||||||||| |
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| T |
29378873 |
actgtttgctttgtacttggccagagatatacaataatacaatcgaggatacatgacacaaatacaatagatttagaaaagtagaagttttttatttagt |
29378774 |
T |
|
| Q |
432 |
tt |
433 |
Q |
| |
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|| |
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|
| T |
29378773 |
tt |
29378772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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