View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1340_low_7 (Length: 549)
Name: NF1340_low_7
Description: NF1340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1340_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 209 - 541
Target Start/End: Complemental strand, 16420944 - 16420610
Alignment:
| Q |
209 |
taatatctttaatcatttgtcatttcaattgtatgagtaaaattgtcctaaaaagacgacaattaaaaaggaacataagaatgttaatttttaccatcct |
308 |
Q |
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| T |
16420944 |
taatatctttaatcatttatcatttcaattgtatgagtaaaattttcctacaaagacgataattaaaaaggaacataagagtgttaatttttaccatcct |
16420845 |
T |
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| Q |
309 |
agtagtttatttggttttgtccttatacacacacatagatgtaccaatatgatggccatgctaaaatatgatatgataactc--tatcatattcatatat |
406 |
Q |
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| T |
16420844 |
agtagtttgtttggttttgtccttatacacacacataggtgtaccagtatgatggtcatgctaaaacatgatatgataactctatatcatattcatatat |
16420745 |
T |
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| Q |
407 |
ttcgtttgatacacttgacaagatactttcaacctattattaattctattctggtttgtctttgtattcatgagtataagttgggttagaaatatcttat |
506 |
Q |
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| T |
16420744 |
ttcgtttgatacacttgacaagatactttcaacctattattaattctatcctgatttgtctttgtattcatgagtataagttgggttagaaatatcttat |
16420645 |
T |
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| Q |
507 |
catgattaaaaactcatttcttatcttttcatctc |
541 |
Q |
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| T |
16420644 |
catgattagaaactcatttcttatcttttcatctc |
16420610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 30 - 129
Target Start/End: Complemental strand, 16421124 - 16421025
Alignment:
| Q |
30 |
agatgtccttcaattcgaccacatttgtattagttaaacgattaagctaaaatcctaaagttctactctttagatcatcaaagttctactctttaattca |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16421124 |
agatgtccttcaattcgaccacatttgtattagttaaacgattaagctaaaatcctaaagttctactctttagatcatcaaagttctactctttaattca |
16421025 |
T |
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