View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1341-Insertion-1 (Length: 736)
Name: NF1341-Insertion-1
Description: NF1341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1341-Insertion-1 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 702; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 702; E-Value: 0
Query Start/End: Original strand, 7 - 736
Target Start/End: Complemental strand, 39110544 - 39109815
Alignment:
| Q |
7 |
aattaactatgcaccttgctgcaaaatcaaaacatgcatagccgttgtatttgtgaaaaagcattgcgattgcatgtgtatctgagtagattccagttac |
106 |
Q |
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| T |
39110544 |
aattaactatgcaccttgctgcaaaatcaaaacatgcatagccgttgtatttgtgaaaaagcattgcgattgcatgtgtatctgagtagattccagttac |
39110445 |
T |
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| Q |
107 |
attactacaagcagagaaagatcctaacaatggtcgattagtatctttataggcctcaagttgtagcttcaaagcttccatatcaagcaaccctttatca |
206 |
Q |
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| T |
39110444 |
attactacaagcagagaaagatcctaacaatggtcgattagtatctttataggcctcaagttgtagcttcaaagcttccatatcaagcaaccctttatca |
39110345 |
T |
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| Q |
207 |
tctaagccaatctctacaacctctgccaaactctgcctccaagaaagtagatttgaatggtgctcatgtggtcctacaaaaaccacccatctttcttctt |
306 |
Q |
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| T |
39110344 |
tctaagccaatctctacaacctctgccaaactctgcctccaagaaagtagatttgaatggtgctcatgtggtcctacaaaaaccacccatctttcttctt |
39110245 |
T |
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| Q |
307 |
tgctaaggctattcaacatactttccctcaaaatagaaggcaatgcaattaccattactccttgaagtcttttgatggatgcggttgtgcctgagccaca |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
39110244 |
tgctaaggctattcaacatactttccctcaaaatagaaggcactgcaattaccattacttcttgaagtcttttgatggatgcagttgtgcctgagccaca |
39110145 |
T |
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| Q |
407 |
gaagatgattgcatcatcttctccgccacctaagcatttcttaatgtactcagttgcttcatgtagcatttttgttgttctgcttcccacataactgtcg |
506 |
Q |
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| T |
39110144 |
gaagatgattgcatcatcttctccgccacctaagcatttcttaatgtactcagttgcttcatgtagcatttttgttgttctgcttcccacataactgtcg |
39110045 |
T |
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| Q |
507 |
caagtatgagtattccctgtccaagaataacaaggctaaaagagatgctcacacattaatattttttagtctcttgtcttctataattttctccatcaac |
606 |
Q |
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| T |
39110044 |
caagtatgagtattccctgtccaagaataacaaggctaaaagagatgctcacacattaatattttttagtctcttgtcttctataattttctccatcaac |
39109945 |
T |
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| Q |
607 |
ctaaatgctttggttgcaaatcatcaattttggtctctttattagaggaagttttggttggtgacaactatttagacatactatttgagtatcctcacgt |
706 |
Q |
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| T |
39109944 |
ctaaatgctttggttgcaaatcatcaattttggtctctttattagaggaagttttggttggtgacaactatttggacatactatttgagtatcctcgcat |
39109845 |
T |
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| Q |
707 |
atttaaaaaatagttttgctaactagtgtg |
736 |
Q |
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| T |
39109844 |
atttaaaaaacagttttgctaactagtgtg |
39109815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 19 - 520
Target Start/End: Complemental strand, 39101423 - 39100922
Alignment:
| Q |
19 |
accttgctgcaaaatcaaaacatgcatagccgttgtatttgtgaaaaagcattgcgattgcatgtgtatctgagtagattccagttacattactacaagc |
118 |
Q |
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||||||||||||||||||| |||||| | || ||||||| ||||| |||| | || ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
39101423 |
accttgctgcaaaatcaaagcatgcaaatcctttgtattggtgaataagcctagcaattgctcgtgtatctgagtagattccagttacattactacaagc |
39101324 |
T |
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| Q |
119 |
agagaaagatcctaacaatggtcgattagtatctttataggcctcaagttgtagcttcaaagcttccatatcaagcaaccctttatcatctaagccaatc |
218 |
Q |
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| T |
39101323 |
tgagaaagatcccaacaagggtcgattggtatctttatatgcctcaagttgtagcttcaaagcttccatatcaagcaacccttgatcatcaaggccaatc |
39101224 |
T |
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| Q |
219 |
tctacaacctctgccaaactctgcctccaagaaagtagatttgaatggtgctcatgtggtcctacaaaaaccacccatctttcttctttgctaaggctat |
318 |
Q |
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||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||| |
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| T |
39101223 |
tctaccacctcagccaaactctgcctccaagaaagtatatttgaatggtgctcatagggtccaacaaaaaccacccatctttcttcttcgctaaggcacc |
39101124 |
T |
|
| Q |
319 |
tcaacatactttccctcaaaatagaaggcaatgcaattaccattactccttgaagtcttttgatggatgcggttgtgcctgagccacagaagatgattgc |
418 |
Q |
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||||||| ||||| |||||||||||||| | | ||| |||||||| ||||||| || ||||||| ||| |||| ||| ||||| || | |||| ||| |
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| T |
39101123 |
tcaacattctttctctcaaaatagaagggacaactattcccattacttcttgaagcctcttgatggctgccgttgcgcccgagccgcatagcatgagtgc |
39101024 |
T |
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| Q |
419 |
atcatcttctccgccacctaagcatttcttaatgtactcagttgcttcatgtagcatttttgttgttctgcttcccacataactgtcgcaagtatgagta |
518 |
Q |
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||| ||||| || |||||||||||||| |||||||||| ||||||||||||| |||||||||||| ||| |||| || ||||| || |||||||| ||| |
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| T |
39101023 |
atcgtcttccccaccacctaagcattttttaatgtacttggttgcttcatgtaccatttttgttgtcctgtttccaacgtaactctcacaagtatgggta |
39100924 |
T |
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| Q |
519 |
tt |
520 |
Q |
| |
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|| |
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| T |
39100923 |
tt |
39100922 |
T |
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Back To:
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