View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1341-Insertion-10 (Length: 268)

Name: NF1341-Insertion-10
Description: NF1341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1341-Insertion-10
NF1341-Insertion-10
[»] chr4 (8 HSPs)
chr4 (7-265)||(5500889-5501147)
chr4 (25-264)||(5469395-5469634)
chr4 (19-264)||(5391701-5391946)
chr4 (20-264)||(5411148-5411392)
chr4 (7-147)||(5425218-5425358)
chr4 (12-227)||(5377374-5377589)
chr4 (7-147)||(5347898-5348038)
chr4 (22-226)||(5353038-5353242)
[»] chr5 (1 HSPs)
chr5 (12-147)||(20327550-20327685)
[»] chr8 (1 HSPs)
chr8 (91-139)||(1483227-1483275)


Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 7 - 265
Target Start/End: Original strand, 5500889 - 5501147
Alignment:
Q  7 actttaatcttgccaatacaaatttttctggaccacttccaaatactatatccaatctgaagcagttatcaaccattgatctctcttactgccaattcaa 106  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5500889 acttgaatcttgccaatacaaatttttctggaccacttccaaatactatatccaatctgaagcagttatcaaccattgatctctcttactgccaattcaa 5500988  T
Q  107 tggaacacttcccagttcaatgtcaaaactcaccaaacttgnnnnnnnagacatatcttcaaataacctcacaggtttacttccttctttcaatatgtct 206  Q
    ||||||||||||||||||||||||| ||||||| |||||||       |||| |||| ||||||||| |||||||||  |||||||||||||||||||||    
T  5500989 tggaacacttcccagttcaatgtcagaactcactaaacttgtttttctagacttatcctcaaataacatcacaggttcccttccttctttcaatatgtct 5501088  T
Q  207 aagagcctcacatatctatccttatatgacaatcatttgagcggagatttatcatccat 265  Q
    |||  |||||||||||||||||||| | ||||||||||||  |||||||||||||||||    
T  5501089 aaggacctcacatatctatccttatttcacaatcatttgaatggagatttatcatccat 5501147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 25 - 264
Target Start/End: Complemental strand, 5469634 - 5469395
Alignment:
Q  25 caaatttttctggaccacttccaaatactatatccaatctgaagcagttatcaaccattgatctctcttactgccaattcaatggaacacttcccagttc 124  Q
    |||||||||| ||| |||||||||||||||| |||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||| |||    
T  5469634 caaatttttcaggagcacttccaaatactatctccaatctaaagcagttatcaaccattgatctatcttattgccagttcaatggaacacttcccaattc 5469535  T
Q  125 aatgtcaaaactcaccaaacttgnnnnnnnagacatatcttcaaataacctcacaggtttacttccttctttcaatatgtctaagagcctcacatatcta 224  Q
    ||||||| |||||||| ||||||       |||| | ||||| |||||||||||||||  ||| ||||||||||||||||| |||| |||||||||||||    
T  5469534 aatgtcagaactcacccaacttgtttatctagacgtgtcttccaataacctcacaggtacactcccttctttcaatatgtccaagaacctcacatatcta 5469435  T
Q  225 tccttatatgacaatcatttgagcggagatttatcatcca 264  Q
    ||||||| |  |||||| |||||||| |||||| ||||||    
T  5469434 tccttatttctcaatcacttgagcggggatttaccatcca 5469395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 19 - 264
Target Start/End: Original strand, 5391701 - 5391946
Alignment:
Q  19 ccaatacaaatttttctggaccacttccaaatactatatccaatctgaagcagttatcaaccattgatctctcttactgccaattcaatggaacacttcc 118  Q
    ||||||||||||| || |||||||||||||||||||| |||||||| |||||||||||||| |||||||| ||||| ||||||||||| |||||||||||    
T  5391701 ccaatacaaatttctcaggaccacttccaaatactatctccaatctaaagcagttatcaacaattgatctatcttattgccaattcaacggaacacttcc 5391800  T
Q  119 cagttcaatgtcaaaactcaccaaacttgnnnnnnnagacatatcttcaaataacctcacaggtttacttccttctttcaatatgtctaagagcctcaca 218  Q
    ||||||||||||| |||||||| ||||||       |||||| ||||| ||  |||||||||||  ||| ||||||||||||||||| ||||  ||||||    
T  5391801 cagttcaatgtcagaactcacccaacttgtgtatctagacatgtcttccaactacctcacaggtccactcccttctttcaatatgtcgaagaatctcaca 5391900  T
Q  219 tatctatccttatatgacaatcatttgagcggagatttatcatcca 264  Q
    ||||||||| ||| |  ||||||||||||||| |||||| ||||||    
T  5391901 tatctatccctatttctcaatcatttgagcggggatttaccatcca 5391946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 20 - 264
Target Start/End: Original strand, 5411148 - 5411392
Alignment:
Q  20 caatacaaatttttctggaccacttccaaatactatatccaatctgaagcagttatcaaccattgatctctcttactgccaattcaatggaacacttccc 119  Q
    |||||||||||| |  |||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||  |||||    
T  5411148 caatacaaatttcttaggaccacttccaaatactatctccaatctgaagcagatatcaaccattgatctatcttactgcaaattcaatggaacgattccc 5411247  T
Q  120 agttcaatgtcaaaactcaccaaacttgnnnnnnnagacatatcttcaaataacctcacaggtttacttccttctttcaatatgtctaagagcctcacat 219  Q
    | |||||||||| |||||||| ||||||       |||||| ||||| |||||||||||||||  ||| ||||| ||||||||||| |||| ||||||||    
T  5411248 aattcaatgtcagaactcacccaacttgtttatttagacatgtcttccaataacctcacaggtccactcccttcgttcaatatgtccaagaacctcacat 5411347  T
Q  220 atctatccttatatgacaatcatttgagcggagatttatcatcca 264  Q
    || ||||||||| |  |||||||||||| || |||||| ||||||    
T  5411348 atttatccttatttctcaatcatttgagtggggatttaccatcca 5411392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 7 - 147
Target Start/End: Complemental strand, 5425358 - 5425218
Alignment:
Q  7 actttaatcttgccaatacaaatttttctggaccacttccaaatactatatccaatctgaagcagttatcaaccattgatctctcttactgccaattcaa 106  Q
    |||| ||||||||| |||||||||| || |||||||||||||||||||| ||||||||||||||  | || || |||||||| ||| |||||||||||||    
T  5425358 acttaaatcttgccgatacaaatttctcaggaccacttccaaatactatctccaatctgaagcacctgtcgactattgatctatctcactgccaattcaa 5425259  T
Q  107 tggaacacttcccagttcaatgtcaaaactcaccaaacttg 147  Q
    |||||||||||||||||||||||| || |||||| ||||||    
T  5425258 tggaacacttcccagttcaatgtctaagctcacccaacttg 5425218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 227
Target Start/End: Original strand, 5377374 - 5377589
Alignment:
Q  12 aatcttgccaatacaaatttttctggaccacttccaaatactatatccaatctgaagcagttatcaaccattgatctctcttactgccaattcaatggaa 111  Q
    ||||||||| |||||||||| || |||||||| ||||||||||| || |||||||||||  | || || |||||||| ||| ||||||||||||||||||    
T  5377374 aatcttgccgatacaaatttctcaggaccactaccaaatactatctcaaatctgaagcacctgtcgactattgatctatctcactgccaattcaatggaa 5377473  T
Q  112 cacttcccagttcaatgtcaaaactcaccaaacttgnnnnnnnagacatatcttcaaataacctcacaggtttacttccttctttcaatatgtctaagag 211  Q
    |||||||||||||||||||  |||||||| || |||       |||| | || |  |||||| ||||||| ||||| |||||||| |  ||||| ||||     
T  5377474 cacttcccagttcaatgtctgaactcacccaaattgtttatctagacttgtcatttaataacttcacaggcttactcccttctttgagcatgtccaagaa 5377573  T
Q  212 cctcacatatctatcc 227  Q
    ||||||||||||||||    
T  5377574 cctcacatatctatcc 5377589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 7 - 147
Target Start/End: Complemental strand, 5348038 - 5347898
Alignment:
Q  7 actttaatcttgccaatacaaatttttctggaccacttccaaatactatatccaatctgaagcagttatcaaccattgatctctcttactgccaattcaa 106  Q
    |||| ||||||||| |||||||||| || |||||||||||||||||||| ||||||||||||||  | || || ||||| || ||| |||||||||||||    
T  5348038 acttaaatcttgccgatacaaatttctcaggaccacttccaaatactatctccaatctgaagcacctgtcgactattgacctatctcactgccaattcaa 5347939  T
Q  107 tggaacacttcccagttcaatgtcaaaactcaccaaacttg 147  Q
    |||||||||||| |||||||||||  |||||||| ||||||    
T  5347938 tggaacacttcctagttcaatgtctgaactcacccaacttg 5347898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 22 - 226
Target Start/End: Original strand, 5353038 - 5353242
Alignment:
Q  22 atacaaatttttctggaccacttccaaatactatatccaatctgaagcagttatcaaccattgatctctcttactgccaattcaatggaacacttcccag 121  Q
    |||||||||| || ||| | ||||||||| || | |||||||||||||| || || || |||||||| |||||||| |||||||||||||||||||| ||    
T  5353038 atacaaatttctcaggatcgcttccaaattctttttccaatctgaagcatttgtctactattgatctatcttactgtcaattcaatggaacacttcctag 5353137  T
Q  122 ttcaatgtcaaaactcaccaaacttgnnnnnnnagacatatcttcaaataacctcacaggtttacttccttctttcaatatgtctaagagcctcacatat 221  Q
     |||||||||||||||||| |||||         ||  ||||||| ||||| || ||||||  ||| ||||||||||||||||| || | ||||||||||    
T  5353138 atcaatgtcaaaactcacccaacttctttatctcgatctatcttcgaataatctaacaggtccactcccttctttcaatatgtccaaaaacctcacatat 5353237  T
Q  222 ctatc 226  Q
     ||||    
T  5353238 atatc 5353242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 12 - 147
Target Start/End: Original strand, 20327550 - 20327685
Alignment:
Q  12 aatcttgccaatacaaatttttctggaccacttccaaatactatatccaatctgaagcagttatcaaccattgatctctcttactgccaattcaatggaa 111  Q
    ||||||||| |||||||||| || |||||||||||||||||||| ||||||||||||||  | || || |||||||| ||| ||||||||||||||||||    
T  20327550 aatcttgccgatacaaatttctcaggaccacttccaaatactatctccaatctgaagcacctgtcgactattgatctatctcactgccaattcaatggaa 20327649  T
Q  112 cacttcccagttcaatgtcaaaactcaccaaacttg 147  Q
    |||||||||||||||||||  | |||||| ||||||    
T  20327650 cacttcccagttcaatgtctgagctcacccaacttg 20327685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 139
Target Start/End: Complemental strand, 1483275 - 1483227
Alignment:
Q  91 cttactgccaattcaatggaacacttcccagttcaatgtcaaaactcac 139  Q
    ||||||| ||||| |||||||||||||||| ||||||||| || |||||    
T  1483275 cttactgtcaatttaatggaacacttcccaattcaatgtccaacctcac 1483227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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