View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1341-Insertion-12 (Length: 294)
Name: NF1341-Insertion-12
Description: NF1341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1341-Insertion-12 |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 28 - 291
Target Start/End: Complemental strand, 46655637 - 46655370
Alignment:
| Q |
28 |
agtttgatcttcaaaaacatcattaattggttatcatttatcaatctccgacaggacctatgatgctgatacattttcttaatgctattagagacgaaga |
127 |
Q |
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| T |
46655637 |
agtttgatcttcaaaaacatcattaattggtcatcatttatcaatctccgacaggacctatgatgctgatacatttttttaatgctattagagacaaaga |
46655538 |
T |
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| Q |
128 |
ttagtagaatgaaagcgatc----tttcacacaactagtgcaaatagagcattgtactgtactatttcatgtaaattttgtgagtactgtctgtaatatt |
223 |
Q |
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| T |
46655537 |
ttggtagaatgaaagcgatcgatctttcacacaactagtgcaaatagagcattgtactgtactatttcatgtaaattttgtgagtactgtctgtaatatt |
46655438 |
T |
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| Q |
224 |
ataccttgaactccatttctataaaatcagcccccaattccaaagcaagctttaatgcttccaaccgt |
291 |
Q |
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| T |
46655437 |
ataccttgaacttcatttctataaaatcagcccccaattccaaagcaagctttaatgcttccaaccgt |
46655370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 8 - 224
Target Start/End: Original strand, 47103602 - 47103818
Alignment:
| Q |
8 |
gatggtgataaagtaaatctagtttgatcttcaaaaacatcattaattggttatcatttatcaatctccgacaggacctatgatgctgatacattttctt |
107 |
Q |
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| T |
47103602 |
gatggtgaaatagtaaatctagtttgatcttcaaaaacatcattaattggtcatcatttatcaatctccgacaggacctatgatgcagatacattttctt |
47103701 |
T |
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| Q |
108 |
aatgctattagagacgaagattagtagaatgaaagcgatctttcacacaactagtgcaaatagagcattgtactgtactatttcatgtaaattttgtgag |
207 |
Q |
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| T |
47103702 |
aatgctattagagacaaagattggtagaatgaaagcgatctttcacacaactagtgcaaatagaacactgtactgtactatttaatgtaaattttgtgag |
47103801 |
T |
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| Q |
208 |
tactgtctgtaatatta |
224 |
Q |
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| T |
47103802 |
tactgtctgtaatatta |
47103818 |
T |
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