View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1341-Insertion-14 (Length: 197)
Name: NF1341-Insertion-14
Description: NF1341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1341-Insertion-14 |
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| [»] chr4 (2 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 3e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 8 - 197
Target Start/End: Complemental strand, 5752288 - 5752099
Alignment:
| Q |
8 |
ataagtctgatacttgatgtaaatagatctttgctcacacacacgcgggaatgtatgtgtatcaattattgtgatgtatacaagagtaacgataatcttt |
107 |
Q |
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| T |
5752288 |
ataagtctgatacttgatgtaaatagatctttgctcacacacacgcggaaatgtatgtgtatcaattattgtgatgtatacaagagtaacgataatcttt |
5752189 |
T |
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| Q |
108 |
tggacatattacaagatcatctttaaccatcattcgcataagaaattcaatttgggttgaaaagaccgcacatttatgcaaaccatctca |
197 |
Q |
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| T |
5752188 |
tggacatattacaagatcatctttaaccatcattcgtctaagaaattcaatttgggttgaaaagaccgcacatttatgcaaaccatctca |
5752099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 117
Target Start/End: Complemental strand, 5747690 - 5747636
Alignment:
| Q |
63 |
tgtgtatcaattattgtgatgtatacaagagtaacgataatcttttggacatatt |
117 |
Q |
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| T |
5747690 |
tgtgtatcaattattgcaatgtctacgtgagtaacaataatcttttggacatatt |
5747636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 178; Significance: 3e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 8 - 197
Target Start/End: Complemental strand, 18682326 - 18682137
Alignment:
| Q |
8 |
ataagtctgatacttgatgtaaatagatctttgctcacacacacgcgggaatgtatgtgtatcaattattgtgatgtatacaagagtaacgataatcttt |
107 |
Q |
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| T |
18682326 |
ataagtctgatacttgatgtaaatagatctttgctcacacacacgcggaaatgtatgtgtatcaattattgtgatgtatacaagagtaacgataatcttt |
18682227 |
T |
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| Q |
108 |
tggacatattacaagatcatctttaaccatcattcgcataagaaattcaatttgggttgaaaagaccgcacatttatgcaaaccatctca |
197 |
Q |
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| T |
18682226 |
tggacatattacaagatcatctttaaccatcattcgtctaagaaattcaatttgggttgaaaagaccgcacatttatgcaaaccatctca |
18682137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 117
Target Start/End: Complemental strand, 18677728 - 18677674
Alignment:
| Q |
63 |
tgtgtatcaattattgtgatgtatacaagagtaacgataatcttttggacatatt |
117 |
Q |
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| T |
18677728 |
tgtgtatcaattattgcaatgtctacgtgagtaacaataatcttttggacatatt |
18677674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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