View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1341-Insertion-17 (Length: 144)

Name: NF1341-Insertion-17
Description: NF1341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1341-Insertion-17
NF1341-Insertion-17
[»] chr8 (4 HSPs)
chr8 (13-124)||(38120685-38120796)
chr8 (8-89)||(38609319-38609400)
chr8 (8-89)||(38794102-38794183)
chr8 (38-79)||(38287457-38287498)
[»] chr4 (2 HSPs)
chr4 (17-121)||(28730265-28730369)
chr4 (65-97)||(33078556-33078588)


Alignment Details
Target: chr8 (Bit Score: 100; Significance: 8e-50; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 8e-50
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 38120796 - 38120685
Alignment:
Q  13 gatgatgatgaagattgtggttcagttctttctctgctgaagtgaatctctatgaaatttgtagttaataagtttacgctgttgtccatctaatgtagct 112  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  38120796 gatgatgatgaagattgcggtttagttctttctctgctgaagtgaatctctatgaaatttgtagttaataagtttacactgttgtccatctaatgtagct 38120697  T
Q  113 aattcacacggt 124  Q
    ||||||||||||    
T  38120696 aattcacacggt 38120685  T

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Target: chr8; HSP #2
Raw Score: 74; E-Value: 3e-34
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 38609319 - 38609400
Alignment:
Q  8 gcttcgatgatgatgaagattgtggttcagttctttctctgctgaagtgaatctctatgaaatttgtagttaataagtttac 89  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38609319 gcttcgatgatgatgaagattgcggtttagttctttctctgctgaagtgaatctctatgaaatttgtagttaataagtttac 38609400  T

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Target: chr8; HSP #3
Raw Score: 74; E-Value: 3e-34
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 38794102 - 38794183
Alignment:
Q  8 gcttcgatgatgatgaagattgtggttcagttctttctctgctgaagtgaatctctatgaaatttgtagttaataagtttac 89  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38794102 gcttcgatgatgatgaagattgcggtttagttctttctctgctgaagtgaatctctatgaaatttgtagttaataagtttac 38794183  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 79
Target Start/End: Original strand, 38287457 - 38287498
Alignment:
Q  38 ttctttctctgctgaagtgaatctctatgaaatttgtagtta 79  Q
    |||||| |||||||||||||| |||||||||| |||||||||    
T  38287457 ttctttttctgctgaagtgaaactctatgaaacttgtagtta 38287498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 1e-26; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 17 - 121
Target Start/End: Complemental strand, 28730369 - 28730265
Alignment:
Q  17 atgatgaagattgtggttcagttctttctctgctgaagtgaatctctatgaaatttgtagttaataagtttacgctgttgtccatctaatgtagctaatt 116  Q
    |||| |||||||| | || | |||||||||||||||||| || || ||||||||||||||||||||||||||| | ||||| ||||||||||||||||||    
T  28730369 atgacgaagattgcgatttacttctttctctgctgaagtaaaactatatgaaatttgtagttaataagtttacaccgttgttcatctaatgtagctaatt 28730270  T
Q  117 cacac 121  Q
    |||||    
T  28730269 cacac 28730265  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 97
Target Start/End: Original strand, 33078556 - 33078588
Alignment:
Q  65 tgaaatttgtagttaataagtttacgctgttgt 97  Q
    ||||||||||||||||||||||||| |||||||    
T  33078556 tgaaatttgtagttaataagtttacactgttgt 33078588  T

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