View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1341-Insertion-19 (Length: 95)

Name: NF1341-Insertion-19
Description: NF1341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1341-Insertion-19
NF1341-Insertion-19
[»] chr3 (3 HSPs)
chr3 (8-95)||(3075623-3075710)
chr3 (8-95)||(3086164-3086251)
chr3 (8-90)||(4555466-4555548)


Alignment Details
Target: chr3 (Bit Score: 80; Significance: 4e-38; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 4e-38
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 3075623 - 3075710
Alignment:
Q  8 cattttgtcaattttgtgtctctactgctgcttcagatattcttcaacactgtcctaatagagcttcagctgttatatggtacaactt 95  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3075623 cattttgtcaattttgtgtctccactgctgcctcagatattcttcaacactgtcctaatagagcttcagctgttatatggtacaactt 3075710  T

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Target: chr3; HSP #2
Raw Score: 76; E-Value: 1e-35
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 3086164 - 3086251
Alignment:
Q  8 cattttgtcaattttgtgtctctactgctgcttcagatattcttcaacactgtcctaatagagcttcagctgttatatggtacaactt 95  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||    
T  3086164 cattttgtcaattttgtgtctctactgctgcttcagatgttcttcagcgctgtcctaatagagcttcagctgttatatggtacaactt 3086251  T

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Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-25
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 4555548 - 4555466
Alignment:
Q  8 cattttgtcaattttgtgtctctactgctgcttcagatattcttcaacactgtcctaatagagcttcagctgttatatggtac 90  Q
    ||||||||||||||||||||||||||||||| ||| || |||||||  |||||||||||||||| ||||||||||||||||||    
T  4555548 cattttgtcaattttgtgtctctactgctgcctcatatgttcttcagtactgtcctaatagagcctcagctgttatatggtac 4555466  T

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