View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1341-Insertion-2 (Length: 625)
Name: NF1341-Insertion-2
Description: NF1341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1341-Insertion-2 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 606; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 606; E-Value: 0
Query Start/End: Original strand, 8 - 625
Target Start/End: Complemental strand, 14282829 - 14282212
Alignment:
| Q |
8 |
ggtcccttgttgattgagagttttgttgatttcacatcaaggaaagatggtacgagtagtgaaggtattgttttgatatcgatcctttttgcggcaaaat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14282829 |
ggtcccttgttgattgagagttttgttgatttcacatcaaggaaagatggtacgagtagtgaaggtattgttttgatatcgatcctttttgcggcaaaat |
14282730 |
T |
|
| Q |
108 |
cacttgaagtacttagtagtcatcagttcaacttccactctcagaaacttggtatgcttgttcgttcgagcataatcacttcagtttacaaaaagggctt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14282729 |
cacttgaagtacttagtagtcatcagttcaacttccactctcagaaacttggtatgcttgttcgttcgagcataatcacttcagtttacaaaaagggctt |
14282630 |
T |
|
| Q |
208 |
aaggttgtcaagttcttcaagacaagctcatggaactggacagattgtgaatcacatggctgttgatgctcaacaactctcagatttgatgatgcagttt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14282629 |
aaggttgtcaagttcttcaagacaagctcatggaactggacagattgtgaatcacatggctgttgatgctcaacaactctcagatttgatgatgcagttt |
14282530 |
T |
|
| Q |
308 |
catcctatatggttgatgccattgcaagtttccgctgcattgtttcttttgtatagctatgttggtgtgtctgtcgtggcatcaattcttggtattgcca |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
14282529 |
catcctatatggttgatgccattgcaagtttccgctgcattgtttcttttgtatagctatgttggcgtgtctgtcgtggcatcaattcttggtattgcca |
14282430 |
T |
|
| Q |
408 |
ttgtctctttctttactctataccgaacaaagagtagtaatagttttcagtttcagataatgaggagccgtgattcgaggctgaaggcgacaaatgagtt |
507 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14282429 |
ttgtctctttctttactctatatcgaacaaagagtagtaatagttttcagtttcagataatgaggagccgtgattcgaggctgaaggcgacaaatgagtt |
14282330 |
T |
|
| Q |
508 |
gcttaacaacatgcgtgtgattaagtttcaagcgtgggaagagtacttcggtaacaagattcgacagtttcgtgaagccgaacatggatggattgggaaa |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14282329 |
gcttaacaacatgcgtgtgattaagtttcaagcgtgggaagagtacttcggtaacaagattcaacagtttcgtgaagccgaacatggatggattgggaaa |
14282230 |
T |
|
| Q |
608 |
ttcttgtactattttgca |
625 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
14282229 |
ttcttgtactattttgca |
14282212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 8 - 624
Target Start/End: Complemental strand, 14304587 - 14303971
Alignment:
| Q |
8 |
ggtcccttgttgattgagagttttgttgatttcacatcaaggaaagatggtacgagtagtgaaggtattgttttgatatcgatcctttttgcggcaaaat |
107 |
Q |
| |
|
||||| ||| ||||| ||||||||||||||||||||||| ||||||| || ||| ||||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
14304587 |
ggtccattgctgattcagagttttgttgatttcacatcacagaaagatagtccgactagtgaaggtattgttttgatatgtgtcctttttgcagcaaaat |
14304488 |
T |
|
| Q |
108 |
cacttgaagtacttagtagtcatcagttcaacttccactctcagaaacttggtatgcttgttcgttcgagcataatcacttcagtttacaaaaagggctt |
207 |
Q |
| |
|
| |||||||||||||| |||||| ||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||| || |
|
|
| T |
14304487 |
ctgttgaagtacttagtgttcatcaattcaacttccattctcagaaactaggtatgcttgttcgctcgagcataatcacttcggtttacaaaaagggttt |
14304388 |
T |
|
| Q |
208 |
aaggttgtcaagttcttcaagacaagctcatggaactggacagattgtgaatcacatggctgttgatgctcaacaactctcagatttgatgatgcagttt |
307 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
14304387 |
aaggttgtcaagttcttcaagacaggctcatggaactggacagattgtgaatcacatggctgttgatgctcaacaactctcagacttgatgaagcagttt |
14304288 |
T |
|
| Q |
308 |
catcctatatggttgatgccattgcaagtttccgctgcattgtttcttttgtatagctatgttggtgtgtctgtcgtggcatcaattcttggtattgcca |
407 |
Q |
| |
|
|||||||| ||| |||||||||| |||||| ||||||||||| |||| ||||||||||||||||||| |||||||| ||| |||||||||||| ||||| |
|
|
| T |
14304287 |
catcctatttggatgatgccattacaagttgccgctgcattggctcttatgtatagctatgttggtgtatctgtcgttgcagcaattcttggtactgcca |
14304188 |
T |
|
| Q |
408 |
ttgtctctttctttactctataccgaacaaagagtagtaatagttttcagtttcagataatgaggagccgtgattcgaggctgaaggcgacaaatgagtt |
507 |
Q |
| |
|
|||||| | ||| ||| ||| ||| | |||| ||||||| ||||||||||| |||||||| |||||| |||||||| ||||| | || |||||||| |
|
|
| T |
14304187 |
ttgtcttctgcttcactgcatatcgatcgaagaatagtaatgtttttcagtttcggataatgatgagccgcgattcgagaatgaagtcaacgaatgagtt |
14304088 |
T |
|
| Q |
508 |
gcttaacaacatgcgtgtgattaagtttcaagcgtgggaagagtacttcggtaacaagattcgacagtttcgtgaagccgaacatggatggattgggaaa |
607 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14304087 |
gcttaacaacatgcgtgtgattaaatttcaagcgtgggaagagtacttcgggaacaagattcaacagtttcgtgaagccgaacatggatggattgggaaa |
14303988 |
T |
|
| Q |
608 |
ttcttgtactattttgc |
624 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
14303987 |
ttcttgtactattttgc |
14303971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 8 - 625
Target Start/End: Complemental strand, 14320978 - 14320361
Alignment:
| Q |
8 |
ggtcccttgttgattgagagttttgttgatttcacatcaaggaaagatggtacgagtagtgaaggtattgttttgatatcgatcctttttgcggcaaaat |
107 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
14320978 |
ggtcccttgttgattcaaagttttgttgatttcacatcaaggaaagatagtacgactagtgaaggtattgttttgatatgtgtcctttttgcagcaaaat |
14320879 |
T |
|
| Q |
108 |
cacttgaagtacttagtagtcatcagttcaacttccactctcagaaacttggtatgcttgttcgttcgagcataatcacttcagtttacaaaaagggctt |
207 |
Q |
| |
|
|| |||||||||||||| |||||| || |||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
14320878 |
cagttgaagtacttagtgttcatcaatttaacttccactctcaaaaactcggtatgcttattcgttcgagcataatcacttcagtttacaaaaagggttt |
14320779 |
T |
|
| Q |
208 |
aaggttgtcaagttcttcaagacaagctcatggaactggacagattgtgaatcacatggctgttgatgctcaacaactctcagatttgatgatgcagttt |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
14320778 |
aaggttgtcaagttcttcaagacaagctcatggaactggccaaattgttaatcacatggctgttgatgctcaacagctctcagatttgatgatgcagttt |
14320679 |
T |
|
| Q |
308 |
catcctatatggttgatgccattgcaagtttccgctgcattgtttcttttgtatagctatgttggtgtgtctgtcgtggcatcaattcttggtattgcca |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| |||| |||| |||||||||||| | || || | ||| || | |||| | | || |
|
|
| T |
14320678 |
catcctatatggttgatgccattgcaagttggtgctgcattggctcttatgtacagctatgttggtctatcagtacttgcagcagtgtttggaactagca |
14320579 |
T |
|
| Q |
408 |
ttgtctctttctttactctataccgaacaaagagtagtaatagttttcagtttcagataatgaggagccgtgattcgaggctgaaggcgacaaatgagtt |
507 |
Q |
| |
|
| || | | |||| || || || ||||| ||||||||||||||||| |||||| ||||||||| |||||| ||||||||| ||||||||||||| ||||| |
|
|
| T |
14320578 |
tagtgtttctcttcacactctatcgaacgaagagtagtaatagtttccagtttaagataatgacgagccgcgattcgaggatgaaggcgacaaacgagtt |
14320479 |
T |
|
| Q |
508 |
gcttaacaacatgcgtgtgattaagtttcaagcgtgggaagagtacttcggtaacaagattcgacagtttcgtgaagccgaacatggatggattgggaaa |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||| ||||| || ||||||||||||| |||| |
|
|
| T |
14320478 |
acttaacaacatgcgtgtgattaagtttcaagcgtgggaagagtactttggtaacaaaattcaacagtttcgcgaagctgagcatggatggattgcgaaa |
14320379 |
T |
|
| Q |
608 |
ttcttgtactattttgca |
625 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
14320378 |
ttcttgtactattttgca |
14320361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 15 - 624
Target Start/End: Complemental strand, 25885653 - 25885044
Alignment:
| Q |
15 |
tgttgattgagagttttgttgatttcacatcaaggaaagatggtacgagtagtgaaggtattgttttgatatcgatcctttttgcggcaaaatcacttga |
114 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |||| | ||||||||||||| ||||||||| |||||||||||| ||||||||| |||| |
|
|
| T |
25885653 |
tgttgattcagagttttgttgatttcacatcaaggaaagatagtactactagtgaaggtattattttgatattgatcctttttgcagcaaaatcagttga |
25885554 |
T |
|
| Q |
115 |
agtacttagtagtcatcagttcaacttccactctcagaaacttggtatgcttgttcgttcgagcataatcacttcagtttacaaaaagggcttaaggttg |
214 |
Q |
| |
|
||| || ||| |||||| | |||||||||||| |||||| | ||||||||| |||||||||||||||| ||||| |||||||||||||| | |||||| |
|
|
| T |
25885553 |
agtgctgagtgttcatcaatacaacttccactcgcagaaaatcggtatgcttattcgttcgagcataattacttcggtttacaaaaagggtctgaggttg |
25885454 |
T |
|
| Q |
215 |
tcaagttcttcaagacaagctcatggaactggacagattgtgaatcacatggctgttgatgctcaacaactctcagatttgatgatgcagtttcatccta |
314 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||| |
|
|
| T |
25885453 |
tcaagttcttcaagacaagctcatggaacaggacagatagtgaatcacatggctgttgatgctcaacaactctcagatatgatgatgcagcttcacccta |
25885354 |
T |
|
| Q |
315 |
tatggttgatgccattgcaagtttccgctgcattgtttcttttgtatagctatgttggtgtgtctgtcgtggcatcaattcttggtattgccattgtctc |
414 |
Q |
| |
|
|||||||||||||||||||||| | | |||||| |||| ||||||||||||||||||| || || | ||| || | ||||| | | ||| || | |
|
|
| T |
25885353 |
tatggttgatgccattgcaagtagctgtggcattggctcttatgtatagctatgttggtgtatcagtacttgcagcattgcttggaactagcatagtgtt |
25885254 |
T |
|
| Q |
415 |
tttctttactctataccgaacaaagagtagtaatagttttcagtttcagataatgaggagccgtgattcgaggctgaaggcgacaaatgagttgcttaac |
514 |
Q |
| |
|
| | || | ||||| ||||| ||||||||||| | |||||||||||||| |||| || || ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
25885253 |
tcttttcgcgctatatcgaaccaagagtagtaacaactttcagtttcagatgatgacaagtcgcgattcgaggatgaaggcgacaaatgagttgcttaac |
25885154 |
T |
|
| Q |
515 |
aacatgcgtgtgattaagtttcaagcgtgggaagagtacttcggtaacaagattcgacagtttcgtgaagccgaacatggatggattgggaaattcttgt |
614 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||| ||| |
|
|
| T |
25885153 |
aacatgcgtgtgattaagtttcaagcttgggaagagtatttcggtaacaagattaaacagtttcgtgaatccgagcatggatggattgggaaattcatgt |
25885054 |
T |
|
| Q |
615 |
actattttgc |
624 |
Q |
| |
|
|||||||||| |
|
|
| T |
25885053 |
actattttgc |
25885044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 15 - 336
Target Start/End: Complemental strand, 44349497 - 44349177
Alignment:
| Q |
15 |
tgttgattgagagttttgttgatttcacatcaaggaaagatggtacgagtagtgaaggtattgttttgatatcgatcctttttgcggcaaaatcacttga |
114 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||| |||| | |||||||| |||| ||||||||| |||||||||||| ||||||||| |||| |
|
|
| T |
44349497 |
tgttgattcagagttttgttgattttacatcaaggaaagatagtactactagtgaagatattattttgatattgatcctttttgcagcaaaatcagttga |
44349398 |
T |
|
| Q |
115 |
agtacttagtagtcatcagttcaacttccactctcagaaacttggtatgcttgttcgttcgagcataatcacttcagtttacaaaaagggcttaaggttg |
214 |
Q |
| |
|
|||||| ||| ||||||| | |||||||||||| |||||| | ||||||||| ||||||||||||||||||||| |||||||||||||| |||| ||| |
|
|
| T |
44349397 |
agtactgagt-gtcatcaatacaacttccactcgcagaaaatcggtatgcttattcgttcgagcataatcactttggtttacaaaaagggtctaagattg |
44349299 |
T |
|
| Q |
215 |
tcaagttcttcaagacaagctcatggaactggacagattgtgaatcacatggctgttgatgctcaacaactctcagatttgatgatgcagtttcatccta |
314 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||| |||| |||| |
|
|
| T |
44349298 |
tcaagttcttcaagacaagctcatggaacaggacagatagtgaatcacatgtctgttgatgctcaacaactctcagatatgatgatgcagcttcacccta |
44349199 |
T |
|
| Q |
315 |
tatggttgatgccattgcaagt |
336 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
44349198 |
tatggttgatgccattgcaagt |
44349177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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