View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1341-Insertion-21 (Length: 81)
Name: NF1341-Insertion-21
Description: NF1341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1341-Insertion-21 |
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| [»] chr8 (7 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 74; Significance: 1e-34; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 1e-34
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 6369013 - 6368940
Alignment:
| Q |
8 |
gaagactgataagtgggttaaattggaaactcgtacagagttgattgaaacttgcaccaccctcatatggattg |
81 |
Q |
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| T |
6369013 |
gaagactgataagtgggttaaattggaaactcgtacagagttgattgaaacttgcaccaccctcatatggattg |
6368940 |
T |
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Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-34
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 6389995 - 6389922
Alignment:
| Q |
8 |
gaagactgataagtgggttaaattggaaactcgtacagagttgattgaaacttgcaccaccctcatatggattg |
81 |
Q |
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| T |
6389995 |
gaagactgataagtgggttaaattggaaactcgtacagagttgattgaaacttgcaccaccctcatatggattg |
6389922 |
T |
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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 79
Target Start/End: Complemental strand, 6409218 - 6409173
Alignment:
| Q |
34 |
aaactcgtacagagttgattgaaacttgcaccaccctcatatggat |
79 |
Q |
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| T |
6409218 |
aaactcgtgcagagttgattgaaacttgcaccaccctcatttggat |
6409173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 6273552 - 6273491
Alignment:
| Q |
20 |
gtgggttaaattggaaactcgtacagagttgattgaaacttgcaccaccctcatatggattg |
81 |
Q |
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| T |
6273552 |
gtgggttaagatgcaaactcgcacagagttgattgactcttgcactaccctcatatggattg |
6273491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 6362201 - 6362165
Alignment:
| Q |
45 |
gagttgattgaaacttgcaccaccctcatatggattg |
81 |
Q |
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| T |
6362201 |
gagttgattgaagcttgcaccaccctcatatggattg |
6362165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 6320417 - 6320370
Alignment:
| Q |
34 |
aaactcgtacagagttgattgaaacttgcaccaccctcatatggattg |
81 |
Q |
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||||| ||||||||||||||||| ||||||| | |||||||||||||| |
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| T |
6320417 |
aaacttgtacagagttgattgaagcttgcactatcctcatatggattg |
6320370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 6330879 - 6330832
Alignment:
| Q |
34 |
aaactcgtacagagttgattgaaacttgcaccaccctcatatggattg |
81 |
Q |
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||||| ||||||||||||||||| ||||||| | |||||||||||||| |
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| T |
6330879 |
aaacttgtacagagttgattgaagcttgcactatcctcatatggattg |
6330832 |
T |
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