View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1341-Insertion-4 (Length: 534)
Name: NF1341-Insertion-4
Description: NF1341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1341-Insertion-4 |
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Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-141; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 196 - 533
Target Start/End: Complemental strand, 2324087 - 2323757
Alignment:
| Q |
196 |
ttgatgtagctagtaaatggttgttttaagattgattctgcaatgtcatctaatcctataatagtggttgtgtcacatcagcaaaaaa--gctacaaaaa |
293 |
Q |
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| T |
2324087 |
ttgatgtagctaggaaatggttgttttaagattaattctgcaatatcatctaatcctataatagtcgttgtgtcacatcagtaaaaaaaagctacaaaaa |
2323988 |
T |
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| Q |
294 |
tgtgtataggtgaaaattattcaaagttgtaaaatagtgaatccaaacatccattttttatgcttttaattttcgctcgagctggaaaaatttcttaaag |
393 |
Q |
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| T |
2323987 |
tgtgtataggtgaaaattattcaaagttgtaaaatagtgaatccaaacattcattttttatgcttttaattttcgctcgagctagaaaaatttcttaaag |
2323888 |
T |
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| Q |
394 |
atggcgagcgaaatacaaccaattgaaccaaattgtatttgttaatagaatccactagctatagcataaagggttttcatgtccaattgcat-gtttttt |
492 |
Q |
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| T |
2323887 |
gtggcgagcgaaatacaacca----------attgtatttgttaatagaatccactagctatagcataaagggttttcatgtccaattgcatagtttttt |
2323798 |
T |
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| Q |
493 |
aatccatcttaatcaagtctctttgtttaaagcagtattat |
533 |
Q |
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| T |
2323797 |
aatccatcttaatcaagtctctttgtttaaagcagtattat |
2323757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 8 - 120
Target Start/End: Complemental strand, 2325628 - 2325517
Alignment:
| Q |
8 |
acatccttaaatattgaaatcaattaatggatgcttaaaacctcgtattcgtcaacttgtttttgtcggggaaatataatgtgtctataaaggtatttat |
107 |
Q |
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| T |
2325628 |
acatccttaaatattgaaatcaattaatggatgattaaaacctcttcttggtcaacttgtttttgtaggggcaa-agagtgtgtctataaaggtatttat |
2325530 |
T |
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| Q |
108 |
agtaaactctttt |
120 |
Q |
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| T |
2325529 |
agcaaactttttt |
2325517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 410 - 447
Target Start/End: Complemental strand, 2344895 - 2344858
Alignment:
| Q |
410 |
aaccaattgaaccaaattgtatttgttaatagaatcca |
447 |
Q |
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| T |
2344895 |
aaccaattgaaccaaattgtatttgttaatagaatcca |
2344858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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