View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1341-Insertion-6 (Length: 471)

Name: NF1341-Insertion-6
Description: NF1341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1341-Insertion-6
NF1341-Insertion-6
[»] scaffold0363 (2 HSPs)
scaffold0363 (131-471)||(15277-15617)
scaffold0363 (64-121)||(15121-15179)
[»] chr8 (17 HSPs)
chr8 (131-471)||(14403236-14403576)
chr8 (161-463)||(6313536-6313839)
chr8 (161-471)||(5598245-5598556)
chr8 (161-471)||(5636719-5637030)
chr8 (140-471)||(5568666-5568995)
chr8 (161-471)||(5624528-5624833)
chr8 (253-453)||(13164381-13164582)
chr8 (161-471)||(5547507-5547818)
chr8 (140-471)||(32632656-32632976)
chr8 (188-398)||(5572855-5573054)
chr8 (257-471)||(5562339-5562542)
chr8 (253-424)||(12190367-12190535)
chr8 (253-424)||(12434795-12434963)
chr8 (266-424)||(12178685-12178840)
chr8 (266-424)||(12423113-12423268)
chr8 (64-121)||(14403674-14403732)
chr8 (189-222)||(13164598-13164631)
[»] chr2 (1 HSPs)
chr2 (253-462)||(19495904-19496108)


Alignment Details
Target: scaffold0363 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 131 - 471
Target Start/End: Original strand, 15277 - 15617
Alignment:
Q  131 aaaaagacttaaaaacctgtatgatgcaggatgaaaaccagactaattagcagcttgaaaaagagcattcttccaattttgcatcatcttatcaccattg 230  Q
    ||||||||| ||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15277 aaaaagact-aaaaacctgtatgttgcagaatgaaaaccagacaaattagcagcttgaaaaagagcattcttccaattttgcatcatcttatcaccattg 15375  T
Q  231 ttgccttgcttcatatgtatttccaacgcagtgccgtaactcccagtctgcttccgcacgtgtgaagggtcaacatggtagaacacaggaacaacaacaa 330  Q
    ||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15376 ttgtcttgctccatatgtttttccaacgcagtgccgtaactcccagtctgcttccgcacgtgtgaagggtcaacatggtagaacacaggaacaacaacaa 15475  T
Q  331 cgttgtcattttcatttttgttactacactccattatttcaaccagttcgttcaaacaccatgttgaagacgcgtagttctccgagaacacaacaagaaa 430  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15476 cgttgtcatcttcatttttgttactacactccattatttcaaccagttcgttcaaacaccatgttgaagacgcgtagttctccgagaacacaacaagaaa 15575  T
Q  431 aagagtggattg-ttgattgctttaacaagttctgaccaaac 471  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  15576 aagagtggattgtttgattgctttaacaagttctgaccaaac 15617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 64 - 121
Target Start/End: Original strand, 15121 - 15179
Alignment:
Q  64 ctcatttctattcatgcattcaagtgacctccttagaattgaaaa-caaatataaaatt 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  15121 ctcatttctattcatgcattcaagtgacctccttagaattgaaaatcaaatataaaatt 15179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 131 - 471
Target Start/End: Complemental strand, 14403576 - 14403236
Alignment:
Q  131 aaaaagacttaaaaacctgtatgatgcaggatgaaaaccagactaattagcagcttgaaaaagagcattcttccaattttgcatcatcttatcaccattg 230  Q
    ||||||||| ||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14403576 aaaaagact-aaaaacctgtatgttgcagaatgaaaaccagacaaattagcagcttgaaaaagagcattcttccaattttgcatcatcttatcaccattg 14403478  T
Q  231 ttgccttgcttcatatgtatttccaacgcagtgccgtaactcccagtctgcttccgcacgtgtgaagggtcaacatggtagaacacaggaacaacaacaa 330  Q
    ||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14403477 ttgtcttgctccatatgtttttccaacgcagtgccgtaactcccagtctgcttccgcacgtgtgaagggtcaacatggtagaacacaggaacaacaacaa 14403378  T
Q  331 cgttgtcattttcatttttgttactacactccattatttcaaccagttcgttcaaacaccatgttgaagacgcgtagttctccgagaacacaacaagaaa 430  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14403377 cgttgtcatcttcatttttgttactacactccattatttcaaccagttcgttcaaacaccatgttgaagacgcgtagttctccgagaacacaacaagaaa 14403278  T
Q  431 aagagtggattg-ttgattgctttaacaagttctgaccaaac 471  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  14403277 aagagtggattgtttgattgctttaacaagttctgaccaaac 14403236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 161 - 463
Target Start/End: Original strand, 6313536 - 6313839
Alignment:
Q  161 atgaaaaccagactaattagcagcttgaaaaagagcattcttccaattttgcatcatcttatcaccattgttgccttgcttcatatgtatttccaacgca 260  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||| | ||| |   |||||||    
T  6313536 atgaaaaccagacaaattagctgcttgaaaaagagcattcttccaattttgcatcatcttatcatcatttttgccttgtttcttgtgtttaatcaacgca 6313635  T
Q  261 gtgccgtaactcccagtctgcttccgcacgtgtgaagggtcaacatggtagaacacaggaacaacaacaacgttgtcattttcatttttgttactacact 360  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||| |||||||||||||| |||||    
T  6313636 gtgccataactaccagtctgcttccgcacgtgtgaagggtcaacatggtagaacactggaataacaacaaccttgtcatcttcatttttgttacaacact 6313735  T
Q  361 ccattatttcaaccagttcgttcaaacaccatgttgaagacgcgtagttctccgagaacacaacaagaaaaagagtggattg-ttgattgctttaacaag 459  Q
    ||||||||||||| |||||||||||||||||||||||||| || ||||| ||||||||||| |||||||| | ||||||||| ||||||||||| || ||    
T  6313736 ccattatttcaacaagttcgttcaaacaccatgttgaagaggcatagttttccgagaacaccacaagaaatatagtggattgtttgattgctttcactag 6313835  T
Q  460 ttct 463  Q
    ||||    
T  6313836 ttct 6313839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 161 - 471
Target Start/End: Original strand, 5598245 - 5598556
Alignment:
Q  161 atgaaaaccagactaattagcagcttgaaaaagagcattcttccaattttgcatcatcttatcaccattgttgccttgcttcatatgtatttccaacgca 260  Q
    ||||||||||||| ||||||| |||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||| | | ||| || |||  |||    
T  5598245 atgaaaaccagacaaattagctgcttgaaaaagaacattcttccaattttgtatcatcttatcatcattgttgccttgctccctgtgttttgccagtgca 5598344  T
Q  261 gtgccgtaactcccagtctgcttccgcacgtgtgaagggtcaacatggtagaacacaggaacaacaacaacgttgtcattttcatttttgttactacact 360  Q
    | |||||||  ||| || || ||||||||||||||||||||||||||||| || |||||||  ||||||||||||||||  ||||||||||||| |||||    
T  5598345 gcgccgtaataccctgtttgtttccgcacgtgtgaagggtcaacatggtaaaaaacaggaatgacaacaacgttgtcatcctcatttttgttaccacact 5598444  T
Q  361 ccattatttcaaccagttcgttcaaacaccatgttgaagacgcgtagttctccgagaacacaacaagaaaaagagtggatt-gttgattgctttaacaag 459  Q
    ||||||||| ||| |||||||||||||||||||||||||| || |||||||| ||||||||||||||||| ||||||||||  |||||||||||||||||    
T  5598445 ccattatttgaacgagttcgttcaaacaccatgttgaagatgcatagttctctgagaacacaacaagaaacagagtggattctttgattgctttaacaag 5598544  T
Q  460 ttctgaccaaac 471  Q
    ||||||||||||    
T  5598545 ttctgaccaaac 5598556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 161 - 471
Target Start/End: Complemental strand, 5637030 - 5636719
Alignment:
Q  161 atgaaaaccagactaattagcagcttgaaaaagagcattcttccaattttgcatcatcttatcaccattgttgccttgcttcatatgtatttccaacgca 260  Q
    ||||||||||||| ||||||| |||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||| | | ||| || |||  |||    
T  5637030 atgaaaaccagacaaattagctgcttgaaaaagaacattcttccaattttgtatcatcttatcatcattgttgccttgctccctgtgttttgccagtgca 5636931  T
Q  261 gtgccgtaactcccagtctgcttccgcacgtgtgaagggtcaacatggtagaacacaggaacaacaacaacgttgtcattttcatttttgttactacact 360  Q
    | |||||||  ||| || || ||||||||||||||||||||||||||||| || |||||||  ||||||||||||||||  ||||||||||||| |||||    
T  5636930 gcgccgtaataccctgtttgtttccgcacgtgtgaagggtcaacatggtaaaaaacaggaatgacaacaacgttgtcatcctcatttttgttaccacact 5636831  T
Q  361 ccattatttcaaccagttcgttcaaacaccatgttgaagacgcgtagttctccgagaacacaacaagaaaaagagtggatt-gttgattgctttaacaag 459  Q
    ||||||||| ||| |||||||||||||||||||||||||| || |||||||| ||||||||||||||||| ||||||||||  |||||||||||||||||    
T  5636830 ccattatttgaacgagttcgttcaaacaccatgttgaagatgcatagttctctgagaacacaacaagaaacagagtggattctttgattgctttaacaag 5636731  T
Q  460 ttctgaccaaac 471  Q
    ||||||||||||    
T  5636730 ttctgaccaaac 5636719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 140 - 471
Target Start/End: Complemental strand, 5568995 - 5568666
Alignment:
Q  140 taaaaacctgtatgatgcaggatgaaaaccagactaattagcagcttgaaaaagagcattcttccaattttgcatcatcttatcaccattgttgccttgc 239  Q
    ||||||||||||||  |  | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | | |||  |||||    
T  5568995 taaaaacctgtatgtcgaggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttccaattttgcatcatcttatcatcttggttctcttgc 5568896  T
Q  240 ttcatatgtatttccaacgcagtgccgtaactcccagtctgcttccgcacgtgtgaagggtcaacatggtagaacacaggaacaacaacaacgttgtcat 339  Q
    ||    ||| |  |||| ||| |||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||  ||| ||| |||||| |    
T  5568895 ttg---tgtttcgccaatgcactgccataactcccggtctgcttccgcacatgtgaagggtcaacatggtagaacacaggaatcacaccaatgttgtcgt 5568799  T
Q  340 tttcatttttgttactacactccattatttcaaccagttcgttcaaacaccatgttgaagacgcgtagttctccgagaacacaacaagaaaaagagtgga 439  Q
     ||||||||||||||  |||||||||| |||||| ||||| |||||||||||||||||||| || |||||||| ||||||||||||||||| ||||| ||    
T  5568798 cttcatttttgttacggcactccattagttcaacaagttcattcaaacaccatgttgaagaagcatagttctctgagaacacaacaagaaacagagttga 5568699  T
Q  440 ttg-ttgattgctttaacaagttctgaccaaac 471  Q
    ||| |||||||||||  ||||||||| ||||||    
T  5568698 ttgtttgattgctttctcaagttctggccaaac 5568666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 161 - 471
Target Start/End: Complemental strand, 5624833 - 5624528
Alignment:
Q  161 atgaaaaccagactaattagcagcttgaaaaagagcattcttccaattttgcatcatcttatcaccattgttgccttgcttcatatgtatttccaacgca 260  Q
    ||||||||||||| ||||||||||||||||||||||| | ||||| |||||||||      |||   | ||||||||||| | | ||| |  |||  |||    
T  5624833 atgaaaaccagacaaattagcagcttgaaaaagagcagtattccatttttgcatc------tcatggtcgttgccttgctccttgtgtttagccagagca 5624740  T
Q  261 gtgccgtaactcccagtctgcttccgcacgtgtgaagggtcaacatggtagaacacaggaacaacaacaacgttgtcattttcatttttgttactacact 360  Q
    ||||| ||||| || ||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||| ||||||    
T  5624739 gtgccataacttccggtctgtttccgcacttgtgaagggtcaacatggtagaacacaggaataacaacaacattgtcatcttcatttttgttattacact 5624640  T
Q  361 ccattatttcaaccagttcgttcaaacaccatgttgaagacgcgtagttctccgagaacacaacaagaaaaagagtggattg-ttgattgctttaacaag 459  Q
    ||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||| | ||||||||||| ||||||||||| |||||    
T  5624639 ccattatttgaacgagttcgttcaaacaccatgttgatgacgcgtagttctccgagaacaccacaagatacagagtggattgtttgattgctttcacaag 5624540  T
Q  460 ttctgaccaaac 471  Q
    ||||| ||||||    
T  5624539 ttctgcccaaac 5624528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 253 - 453
Target Start/End: Complemental strand, 13164582 - 13164381
Alignment:
Q  253 ccaacgcagtgccgtaactcccagtctgcttccgcacgtgtgaagggtcaacatggtagaacacaggaacaacaacaacgttgtcattttcatttttgtt 352  Q
    |||| |||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||    
T  13164582 ccaaagcagtgccgtaactgccagtctgcttccgaacatgtgaagggtcaacatggtagaacacaggaataacaacaacgttatcattttcattgttgtt 13164483  T
Q  353 actacactccattatttcaaccagttcgttcaaacaccatgttgaagacgcgtagttctccgagaacacaacaagaaaaagagtggatt-gttgattgct 451  Q
     |||||||||||||||| ||| |||||||||||||||||||||||| | ||||||||||| |||||||| |||||||||||||||||||  |||||||||    
T  13164482 gctacactccattatttgaactagttcgttcaaacaccatgttgaaaatgcgtagttctctgagaacacgacaagaaaaagagtggattcattgattgct 13164383  T
Q  452 tt 453  Q
    ||    
T  13164382 tt 13164381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 161 - 471
Target Start/End: Complemental strand, 5547818 - 5547507
Alignment:
Q  161 atgaaaaccagactaattagcagcttgaaaaagagcattcttccaattttgcatcatcttatcaccattgttgccttgcttcatatgtatttccaacgca 260  Q
    ||||||||||||| |||||||||||| | |||||||| | ||||| |||||||||      |||   | ||||||||||||| | ||| |  |||| |||    
T  5547818 atgaaaaccagacaaattagcagcttcagaaagagcagtattccatttttgcatc------tcatggtcgttgccttgcttcttgtgtttagccaaggca 5547725  T
Q  261 gtgccgtaactcccagtctgcttccgcacgtgtgaagggtcaacatggtagaacacaggaacaacaacaacgttgtcattttcatttttgttact----- 355  Q
    ||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |         
T  5547724 gtgccataactcccagtttgcttcctcacgtgtgaagggtcaacatggtagaacacaggaataacaacaacgttgtcatcttcatttttgttaatgtcga 5547625  T
Q  356 -acactccattatttcaaccagttcgttcaaacaccatgttgaagacgcgtagttctccgagaacacaacaagaaaaagagtggattg-ttgattgcttt 453  Q
       |||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||| | ||||||||| || ||||| ||    
T  5547624 ataactccattatctcaaccagttcgttcaaacaccatgttgaagatgcgtagttcttcgagaacacgacaagaaacaaagtggattgtttcattgcctt 5547525  T
Q  454 aacaagttctgaccaaac 471  Q
     |||||||||| ||||||    
T  5547524 cacaagttctgcccaaac 5547507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 140 - 471
Target Start/End: Complemental strand, 32632976 - 32632656
Alignment:
Q  140 taaaaacctgtatgatgcaggatgaaaaccagactaattagcagcttgaaaaagagcattcttccaattttgcatcatcttatcaccattgttgccttgc 239  Q
    |||| |||||||||  | || ||||||||| ||  |||| || |||||||||||||||||||||||||||||||||||||||| | ||  |   ||||||    
T  32632976 taaatacctgtatgtggtagaatgaaaaccggataaattggctgcttgaaaaagagcattcttccaattttgcatcatcttatgatcacag---ccttgc 32632880  T
Q  240 ttcatatgtatttccaacgcagtgccgtaactcccagtctgcttccgcacgtgtgaagggtcaacatggtagaacacaggaacaacaacaacgttgtcat 339  Q
    ||| | ||| || ||||||||||||||||||| |||||||| ||||||||| | || ||||||| |||||| |||||||||| |||| ||||||||||      
T  32632879 ttcttgtgttttgccaacgcagtgccgtaacttccagtctgtttccgcacgcgggaggggtcaatatggtaaaacacaggaataacagcaacgttgtc-- 32632782  T
Q  340 tttcatttttgttactacactccattatttcaaccagttcgttcaaacaccatgttgaagacgcgtagttctccgagaacacaacaagaaaaagagtgga 439  Q
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||| || | ||| | ||||||    
T  32632781 -------tttgttactacactccattatttcaacgagttcgttcaaacaccatgttgaagacgcatagttcttcgagaacactaccaaaaagatagtgga 32632689  T
Q  440 ttg-ttgattgctttaacaagttctgaccaaac 471  Q
    ||| |||||||||||   |||||||| ||||||    
T  32632688 ttgtttgattgctttcgtaagttctgcccaaac 32632656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 188 - 398
Target Start/End: Complemental strand, 5573054 - 5572855
Alignment:
Q  188 aaaaagagcattcttccaattttgcatcatcttatcaccattgttgccttgcttcatatgtatttccaacgcagtgccgtaactcccagtctgcttccgc 287  Q
    ||||||||| ||||||||| |||| |||||| ||||| |||||   ||||||||| | ||| || |||| ||||||||||||||||| |||||||||||     
T  5573054 aaaaagagctttcttccaaatttgtatcatcatatcatcattg---ccttgcttcttgtgttttgccaaagcagtgccgtaactccccgtctgcttccgg 5572958  T
Q  288 acgtgtgaagggtcaacatggtagaacacaggaacaacaacaacgttgtcattttcatttttgttactacactccattatttcaaccagttcgttcaaac 387  Q
    ||||||||||||||||||||||     || |||| ||||||||| ||||| |||||||||||||    ||| | |||||||||||| |||| ||||||||    
T  5572957 acgtgtgaagggtcaacatggt-----acgggaataacaacaacattgtctttttcatttttgt---gacatttcattatttcaacaagtttgttcaaac 5572866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 257 - 471
Target Start/End: Complemental strand, 5562542 - 5562339
Alignment:
Q  257 cgcagtgccgtaactcccagtctgcttccgcacgtgtgaagggtcaacatggtagaacacaggaacaacaacaacgttgtcattttcatttttgttacta 356  Q
    |||||||||||||||||| || || ||||| || |  |||||||||||||||||||||||||||  ||||||    |||      ||||||||||         
T  5562542 cgcagtgccgtaactccctgtgtgtttccgaacatcagaagggtcaacatggtagaacacaggattaacaac----ttg-----atcatttttgt---gg 5562455  T
Q  357 cactccattatttcaaccagttcgttcaaacaccatgttgaagacgcgtagttctccgagaacacaacaagaaaaagagtggattg-ttgattgctttaa 455  Q
    || |||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||| || ||||| || |    
T  5562454 cattccattatttgaacgagttcattcaaacaccatgttgaagacgcgtagttctccgagaacacgacaagaaacaaagtggattgtttcattgccttca 5562355  T
Q  456 caagttctgaccaaac 471  Q
    ||||||||| ||||||    
T  5562354 caagttctgcccaaac 5562339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 253 - 424
Target Start/End: Original strand, 12190367 - 12190535
Alignment:
Q  253 ccaacgcagtgccgtaactcccagtctgcttccgcacgtgtgaagggtcaacatggtagaacacaggaacaacaacaacgttgtcattttcatttttgtt 352  Q
    ||||||| |||  ||||||||| |||||||| || || |||||||| || | | ||||||||||||||| ||||||||||||||| |  |||||||| ||    
T  12190367 ccaacgccgtgtggtaactccctgtctgctttcggacatgtgaaggttctatacggtagaacacaggaataacaacaacgttgtcttcgtcatttttttt 12190466  T
Q  353 actacactccattatttcaaccagttcgttcaaacaccatgttgaagacgcgtagttctccgagaacacaac 424  Q
     |   ||| |||||||||||| ||||| |||||||||||||||||||| || ||||| || |||||||||||    
T  12190467 gc---acttcattatttcaacgagttcattcaaacaccatgttgaagatgcatagttttctgagaacacaac 12190535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 253 - 424
Target Start/End: Original strand, 12434795 - 12434963
Alignment:
Q  253 ccaacgcagtgccgtaactcccagtctgcttccgcacgtgtgaagggtcaacatggtagaacacaggaacaacaacaacgttgtcattttcatttttgtt 352  Q
    ||||||| |||  ||||||||| |||||||| || || |||||||| || | | ||||||||||||||| ||||||||||||||| |  |||||||| ||    
T  12434795 ccaacgccgtgtggtaactccctgtctgctttcggacatgtgaaggttctatacggtagaacacaggaataacaacaacgttgtcttcgtcatttttttt 12434894  T
Q  353 actacactccattatttcaaccagttcgttcaaacaccatgttgaagacgcgtagttctccgagaacacaac 424  Q
     |   ||| |||||||||||| ||||| |||||||||||||||||||| || ||||| || |||||||||||    
T  12434895 gc---acttcattatttcaacgagttcattcaaacaccatgttgaagatgcatagttttctgagaacacaac 12434963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 266 - 424
Target Start/End: Original strand, 12178685 - 12178840
Alignment:
Q  266 gtaactcccagtctgcttccgcacgtgtgaagggtcaacatggtagaacacaggaacaacaacaacgttgtcattttcatttttgttactacactccatt 365  Q
    |||||| || |||||||| || || |||||||  || | | ||||||||||||||| ||||||||||||||| |  |||||||| || |   ||| ||||    
T  12178685 gtaacttcctgtctgctttcggacatgtgaagcttctatacggtagaacacaggaataacaacaacgttgtcttcgtcattttttttgc---acttcatt 12178781  T
Q  366 atttcaaccagttcgttcaaacaccatgttgaagacgcgtagttctccgagaacacaac 424  Q
    |||||||| ||||| |||||||||||||||||||| || ||||| || |||||||||||    
T  12178782 atttcaacgagttcattcaaacaccatgttgaagatgcatagttttctgagaacacaac 12178840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 266 - 424
Target Start/End: Original strand, 12423113 - 12423268
Alignment:
Q  266 gtaactcccagtctgcttccgcacgtgtgaagggtcaacatggtagaacacaggaacaacaacaacgttgtcattttcatttttgttactacactccatt 365  Q
    |||||| || |||||||| || || |||||||  || | | ||||||||||||||| ||||||||||||||| |  |||||||| || |   ||| ||||    
T  12423113 gtaacttcctgtctgctttcggacatgtgaagcttctatacggtagaacacaggaataacaacaacgttgtcttcgtcattttttttgc---acttcatt 12423209  T
Q  366 atttcaaccagttcgttcaaacaccatgttgaagacgcgtagttctccgagaacacaac 424  Q
    |||||||| ||||| |||||||||||||||||||| || ||||| || |||||||||||    
T  12423210 atttcaacgagttcattcaaacaccatgttgaagatgcatagttttctgagaacacaac 12423268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 64 - 121
Target Start/End: Complemental strand, 14403732 - 14403674
Alignment:
Q  64 ctcatttctattcatgcattcaagtgacctccttagaattgaaaa-caaatataaaatt 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  14403732 ctcatttctattcatgcattcaagtgacctccttagaattgaaaatcaaatataaaatt 14403674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 222
Target Start/End: Complemental strand, 13164631 - 13164598
Alignment:
Q  189 aaaagagcattcttccaattttgcatcatcttat 222  Q
    ||||||||||||||||||||||||| ||||||||    
T  13164631 aaaagagcattcttccaattttgcaacatcttat 13164598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 253 - 462
Target Start/End: Original strand, 19495904 - 19496108
Alignment:
Q  253 ccaacgcagtgccgtaactcccagtctgcttccgcacgtgtgaagggtcaacatggtagaacacaggaacaacaacaacgttgtcattttcatttttgtt 352  Q
    ||||||||| ||| |||||||||||||||||||| || | |||||| |||| | ||||||||||||||| ||||||||| |||||    |  ||||| ||    
T  19495904 ccaacgcagcgccataactcccagtctgcttccgaacatatgaaggttcaatacggtagaacacaggaagaacaacaac-ttgtc----tactttttctt 19495998  T
Q  353 actacactccattatttcaaccagttcgttcaaacaccatgttgaagacgcgtagttctccgagaacacaacaagaaaaagagtggatt-gttgattgct 451  Q
     ||||||| |||||||||||| ||||| | |||||||||  | |||  |||||||||||| |||||||| || ||||||||||| ||||  || ||||||    
T  19495999 -ctacacttcattatttcaacaagttcatccaaacaccaactggaatccgcgtagttctctgagaacaccactagaaaaagagttgattcattcattgct 19496097  T
Q  452 ttaacaagttc 462  Q
    || ||||||||    
T  19496098 ttcacaagttc 19496108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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