View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1341-Insertion-7 (Length: 492)
Name: NF1341-Insertion-7
Description: NF1341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1341-Insertion-7 |
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Alignment Details
Target: chr7 (Bit Score: 430; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 7 - 460
Target Start/End: Complemental strand, 42552367 - 42551915
Alignment:
| Q |
7 |
aacttcatcaaatcgctaatctatagaattagatcattataattgaaaacagtttgggacaatagcttaatcaaaatgaaagctagctctattgtattta |
106 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42552367 |
aacttcatcatatcgctaatctatagaattagatcattataattgaaaacagtttgtgacaatagcttaatcaaaatgaaagctagctctattgtattta |
42552268 |
T |
|
| Q |
107 |
gagatatatgcattattacaacttctgtgatcaaattatagctagactagaaatatgtcctaataccccaaaaaatgaaagagtattagtgtgtgatatg |
206 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42552267 |
gagatatatgcattactacaacttctgtgatcaaattatagctagact-gaaatatgtcctaataccccaaaaaatgaaagagtattagtgtgtgatatg |
42552169 |
T |
|
| Q |
207 |
atatatgcacttacttcaaatcaattcatcaaaaatatttcccatgtcaaacttacaattgttacattctatagcattaaccacttcatgaaatgctgaa |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42552168 |
atatatgcacttacttcaaatcaattcatcaaaaatatttcccatgtcaaacttacaattgttacattctatagcattaaccacttcatgaaatgctgaa |
42552069 |
T |
|
| Q |
307 |
acactacatggaactaccaagccattcctctgttcaaatccaaattcattgtatgctttctccaacaacatcttgaataatggatgtgagaggaactggg |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42552068 |
acactacatggaactaccaagccattcctctgttcaaatccaaattcattgtatgctttctccaacaacatcttgaataatggatgtgagaggaactggg |
42551969 |
T |
|
| Q |
407 |
ttggaaccacatatctctgtcgttcatccccaacatatagtgcaaaaacaccac |
460 |
Q |
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| T |
42551968 |
ttggaaccacgtatctctgtcgttcatccccaacatatagtgcaaaaacaccac |
42551915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 175 - 460
Target Start/End: Complemental strand, 42547941 - 42547661
Alignment:
| Q |
175 |
caaaaaatgaaagagtattagtgtgtgatatgatatatgcacttacttcaaatcaattcatcaaaaatatttcccatgtcaaacttacaattgttacatt |
274 |
Q |
| |
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||||||||||| |||||||||||||||| || |||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42547941 |
caaaaaatgaaggagtattagtgtgtgacat-----atgctcctacttcaaatcaattcatcaaaaatatttcccatgtcaaacttacaattattacatt |
42547847 |
T |
|
| Q |
275 |
ctatagcattaaccacttcatgaaatgctgaaacactacatggaactaccaagccattcctctgttcaaatccaaattcattgtatgctttctccaacaa |
374 |
Q |
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||||||| ||||| || || ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
42547846 |
ctatagccttaacaacctcttgaaatgctgaaacactacatggaactaccaagccattcttctgttcaaacccaaattcattgtatgctttctccaacaa |
42547747 |
T |
|
| Q |
375 |
catcttgaataatggatgtgagaggaactgggttggaaccacatatctctgtcgttcatccccaacatatagtgcaaaaacaccac |
460 |
Q |
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||| ||||||||||||||||||||| || |||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
42547746 |
cattttgaataatggatgtgagaggtacctggttggaaccacatatttctgtcgttcctccccaacatatagtgcaaaaacaccac |
42547661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 255 - 459
Target Start/End: Original strand, 26008278 - 26008482
Alignment:
| Q |
255 |
aaacttacaattgttacattctatagcattaaccacttcatgaaatgctgaaacactacatggaactaccaagccattcctctgttcaaatccaaattca |
354 |
Q |
| |
|
|||||| | |||||||||||| |||||||| || || || ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
26008278 |
aaacttgccattgttacattcaatagcatttacaacctcttgaaatgttgaaacactacatggaactaccaagccattcctctgctcaaatccaaactca |
26008377 |
T |
|
| Q |
355 |
ttgtatgctttctccaacaacatcttgaataatggatgtgagaggaactgggttggaaccacatatctctgtcgttcatccccaacatatagtgcaaaaa |
454 |
Q |
| |
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||||||| ||||||||||||||||||||||| || || || || | ||||||||||||| |||||| | || ||||| ||||| |||||||||| |
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| T |
26008378 |
ttgtatgacttctccaacaacatcttgaataaagggtgagaaagatagcttgttggaaccacatgtctctggtgctcttcccctacatagagtgcaaaaa |
26008477 |
T |
|
| Q |
455 |
cacca |
459 |
Q |
| |
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|||| |
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|
| T |
26008478 |
aacca |
26008482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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