View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1341-Insertion-8 (Length: 327)
Name: NF1341-Insertion-8
Description: NF1341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1341-Insertion-8 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 8 - 327
Target Start/End: Complemental strand, 48792143 - 48791824
Alignment:
| Q |
8 |
ctacattctccatgggatggtttggagaagaagagagtaaaagggctgtgagagttgactgttttatgaaagaaaacagtgttaatatatatgttaggcc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
48792143 |
ctacattctccatgggatggtttggagaagaagagagtaaaaggactgtgagagttgactgttttatgaaagaaaacagtgttaatatatatgtgaggcc |
48792044 |
T |
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| Q |
108 |
tattagtggattaaccattgttgttgatcttggactacagaaaattgttgaatatcatgactgagaaattgaaactgtgcctacagctgaaaacactgaa |
207 |
Q |
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| T |
48792043 |
tattagtggattaaccattgttgttgatcttggactacagaaaattgttgaatatcatgacagagaaattgaaactgtgcctacagctgaaaacactgaa |
48791944 |
T |
|
| Q |
208 |
tatcaggtttcaaaacaaagcccaccatttggaccaaaccagcatagtcttaccagtcatcaacctcaaggtcctggcttccagatcaagggccatagtg |
307 |
Q |
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| T |
48791943 |
tatcaggtttcaaaacaaagcccaccatttggaccaaaccagcatagtcttaccagtcatcaacctcaaggtcctggcttccagatcaagggccatagtg |
48791844 |
T |
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| Q |
308 |
ttaggtacgtaatgttcttt |
327 |
Q |
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|||||||||||||||||||| |
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| T |
48791843 |
ttaggtacgtaatgttcttt |
48791824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 8 - 314
Target Start/End: Original strand, 48833250 - 48833556
Alignment:
| Q |
8 |
ctacattctccatgggatggtttggagaagaagagagtaaaagggctgtgagagttgactgttttatgaaagaaaacagtgttaatatatatgttaggcc |
107 |
Q |
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||||||||||||||||||||||||||||| ||||||||| |||| ||||||| ||||||| ||||||||||||| | ||| ||||| ||||| ||||| |
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| T |
48833250 |
ctacattctccatgggatggtttggagaaaaagagagtagaaggactgtgaggattgactgctttatgaaagaaagtactgtaaatatttatgtgaggcc |
48833349 |
T |
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| Q |
108 |
tattagtggattaaccattgttgttgatcttggactacagaaaattgttgaatatcatgactgagaaattgaaactgtgcctacagctgaaaacactgaa |
207 |
Q |
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| T |
48833350 |
tattagtggattaacaattgttgttgatcttggtcgtatgaaaattgttgagtatcatgacagggaaattgaaactgtgcctacagctgagaacaatgaa |
48833449 |
T |
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| Q |
208 |
tatcaggtttcaaaacaaagcccaccatttggaccaaaccagcatagtcttaccagtcatcaacctcaaggtcctggcttccagatcaagggccatagtg |
307 |
Q |
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||||||||||||||||||| |||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
48833450 |
tatcaggtttcaaaacaaaacccaccatttggaccaaaacagcatagtcttgcaagtcatcaacctcaaggtcctggcttccagatcaatggccacagtg |
48833549 |
T |
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| Q |
308 |
ttaggta |
314 |
Q |
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||||||| |
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| T |
48833550 |
ttaggta |
48833556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 11 - 323
Target Start/End: Complemental strand, 15827612 - 15827300
Alignment:
| Q |
11 |
cattctccatgggatggtttggagaagaagagagtaaaagggctgtgagagttgactgttttatgaaagaaaacagtgttaatatatatgttaggcctat |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||| | | ||| |||||||| |
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| T |
15827612 |
cattctccatgggatggtttggagaagaagagagtaaaaggactgtgagagttgattgttttatgaaagaaaacactgttaatttttttgtgaggcctat |
15827513 |
T |
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| Q |
111 |
tagtggattaaccattgttgttgatcttggactacagaaaattgttgaatatcatgactgagaaattgaaactgtgcctacagctgaaaacactgaatat |
210 |
Q |
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| T |
15827512 |
tagtggattaacaatggttgctgatcttggactcatgaaaattgttgaatatcatgatagagaagttgaagttgtgcctacggctgagaacactgaatat |
15827413 |
T |
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| Q |
211 |
caggtttcaaaacaaagcccaccatttggaccaaaccagcatagtcttaccagtcatcaacctcaaggtcctggcttccagatcaagggccatagtgtta |
310 |
Q |
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||| |||||||||||| || |||||||||||||| |||||||||||| | ||||||||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
15827412 |
aaggcttcaaaacaaagacctccatttggaccaaaacagcatagtcttgcaagtcatcaacctcaaggtcctggcttcttgatcaatggccatagtgtta |
15827313 |
T |
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| Q |
311 |
ggtacgtaatgtt |
323 |
Q |
| |
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|||| |||||||| |
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| T |
15827312 |
ggtaagtaatgtt |
15827300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 19 - 314
Target Start/End: Complemental strand, 48817680 - 48817385
Alignment:
| Q |
19 |
atgggatggtttggagaagaagagagtaaaagggctgtgagagttgactgttttatgaaagaaaacagtgttaatatatatgttaggcctattagtggat |
118 |
Q |
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|||||||||||||||||| |||||| || |||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||| |
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| T |
48817680 |
atgggatggtttggagaaaaagagaatagaaggactgtgagagttgactgttttatgaaagaaagtactgttaatatatatgttaggcctattactggaa |
48817581 |
T |
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| Q |
119 |
taaccattgttgttgatcttggactacagaaaattgttgaatatcatgactgagaaattgaaactgtgcctacagctgaaaacactgaatatcaggtttc |
218 |
Q |
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| T |
48817580 |
tcaccatggtggctgatcttagtctaatgaaaattgttgagtaccatgatagagatgttgaagcagtgcctactgctgagaatactgattacagggtttc |
48817481 |
T |
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| Q |
219 |
aaaacaaagcccaccatttggaccaaaccagcatagtcttaccagtcatcaacctcaaggtcctggcttccagatcaagggccatagtgttaggta |
314 |
Q |
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||||||||| ||||||||||||||||| |||||||||||| | ||| |||||||||||||||||||||| |||||||| || || ||||||||||| |
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| T |
48817480 |
aaaacaaagtccaccatttggaccaaaacagcatagtcttgctagttatcaacctcaaggtcctggctttcagatcaatggtcacagtgttaggta |
48817385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 27 - 208
Target Start/End: Original strand, 40845618 - 40845799
Alignment:
| Q |
27 |
gtttggagaagaagagagtaaaagggctgtgagagttgactgttttatgaaagaaaacagtgttaatatatatgttaggcctattagtggattaaccatt |
126 |
Q |
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|||||||||||| | |||| ||| ||||||| | ||||| || ||||||||||||| || |||||||||||||||||||||| |||| | | ||| |
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| T |
40845618 |
gtttggagaagagaaaagtagtaggactgtgaggttagactgcttaatgaaagaaaacactgccaatatatatgttaggcctattactggaattaaaatt |
40845717 |
T |
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| Q |
127 |
gttgttgatcttggactacagaaaattgttgaatatcatgactgagaaattgaaactgtgcctacagctgaaaacactgaat |
208 |
Q |
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||||||||||||| ||| ||| |||||||| |||||||| ||| |||||| |||||||||| | ||| ||||| |||| |
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| T |
40845718 |
gttgttgatcttgaacttatgaagattgttgagtatcatgatagagttattgaagctgtgcctacggatgagaacacagaat |
40845799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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