View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13410_high_2 (Length: 317)
Name: NF13410_high_2
Description: NF13410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13410_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 11 - 304
Target Start/End: Original strand, 38577726 - 38578017
Alignment:
| Q |
11 |
gaatgccagttgcccgttgcttaagaaaattttactaatcaatcatatggaatcaaatttgcagccaaacacatacacttgaaggttttagggttgctat |
110 |
Q |
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| T |
38577726 |
gaatgccagttgcccgttgattaagcaaattttaccaatcaatcatatg-aatcaaatttgcagccaaacacatacacttgaaggttttagggttgcttt |
38577824 |
T |
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| Q |
111 |
catgacaataaaaatggaatgatnnnnnnnnncgagaactctcttttattcatttggctggccaatgacgaattaaggaaattccacaccttatatttca |
210 |
Q |
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| T |
38577825 |
aatgacaataaaaatggaatgataaaaaaaaacgagaactctcttttattcatttggctggccaatgacgaattaaggaaattccacaccttatatttca |
38577924 |
T |
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| Q |
211 |
gcaaactgccgcataaggattgtgcaaccaaaccaattttgttgatttcaaatcaagctattactactcactaaaaaactagcatgaatttttt |
304 |
Q |
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| T |
38577925 |
ccaacc-gccgcataaggattgtgcaaccaaaccaattttgttgatttcaaatcaagctattactactcactaaaaaactagcatgaatttttt |
38578017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 144 - 304
Target Start/End: Original strand, 38590815 - 38590972
Alignment:
| Q |
144 |
gagaactctcttttattcatttggctggccaatgacgaattaaggaaattccacaccttatatttcagcaaactgccgcataaggattgtgcaaccaaac |
243 |
Q |
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| T |
38590815 |
gagaactttgttttattcatttggctggccaatgatgaatcaaggaaattccacacctaatatttcagcaagctgctgcataaggtttgtccaaccaaac |
38590914 |
T |
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| Q |
244 |
caattttgttgatttcaaatcaagctattactactcactaaaaaactagcatgaatttttt |
304 |
Q |
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| T |
38590915 |
c---tttgttgatttcaaatcaagctattattactcactaaaatactagcatgaagttttt |
38590972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 14 - 108
Target Start/End: Original strand, 38590663 - 38590757
Alignment:
| Q |
14 |
tgccagttgcccgttgcttaagaaaattttactaatcaatcatatggaatcaaatttgcagccaaacacatacacttgaaggttttagggttgct |
108 |
Q |
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| T |
38590663 |
tgccagttgcctgtcgcttaagcaaattttactaatcaattatatggaatcaaatttgcagccaaacacatacacttcaaggttttagggttgct |
38590757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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