View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13410_low_1 (Length: 434)
Name: NF13410_low_1
Description: NF13410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13410_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 212 - 424
Target Start/End: Complemental strand, 11624891 - 11624679
Alignment:
| Q |
212 |
cagacaaattactcctgtgtccacgctgcaacagcgcggacacaaagttctgttactacaataattacaacgtcaatcagccgcgctatttttgcaaggc |
311 |
Q |
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| T |
11624891 |
cagacaaattactcctgtgtccacgctgcaacagcgcggacacaaagttctgttactacaataattacaacgtcaatcagccgcgctatttctgcaaggc |
11624792 |
T |
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| Q |
312 |
gtgtcaaagatattggactgcaggcggaaccatgagaaatgttccggtgggtgcaggaagaagaaaaaataagaacaactcttcgtcacattatcgccac |
411 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
11624791 |
gtgtcaaagatattggactgcaggtggaaccatgagaaatgttccggtgggtgcaggaagaagaaaaaataagaacaactcttcgtcgcattatcgccac |
11624692 |
T |
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| Q |
412 |
atcaccatctctg |
424 |
Q |
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||||||||||||| |
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| T |
11624691 |
atcaccatctctg |
11624679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 11625078 - 11624964
Alignment:
| Q |
19 |
gaaaagaaagaagctgatcctccaccggatgccgcagagatcaagaacaacaacaattcagcagcaacattaccggagggtattcagaacccaaaaacac |
118 |
Q |
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| T |
11625078 |
gaaaagaaagaagctgatcctccaccagatgcagcagagatcaagaacaacaacaattcagcagcaacattaccggagggt------aacccaaaaacac |
11624985 |
T |
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| Q |
119 |
cttccatagatgaagaaactt |
139 |
Q |
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| T |
11624984 |
cttccatagatgaagaaactt |
11624964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 249 - 356
Target Start/End: Original strand, 31771803 - 31771910
Alignment:
| Q |
249 |
ggacacaaagttctgttactacaataattacaacgtcaatcagccgcgctatttttgcaaggcgtgtcaaagatattggactgcaggcggaaccatgaga |
348 |
Q |
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| T |
31771803 |
ggacaccaaattttgttacttcaacaattacaatgtcaaccagcctcgtcatttttgtaagaaatgtcaaagatattggactgcaggaggaacaatgaga |
31771902 |
T |
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| Q |
349 |
aatgttcc |
356 |
Q |
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| T |
31771903 |
aatgttcc |
31771910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 365
Target Start/End: Original strand, 2823621 - 2823737
Alignment:
| Q |
249 |
ggacacaaagttctgttactacaataattacaacgtcaatcagccgcgctatttttgcaaggcgtgtcaaagatattggactgcaggcggaaccatgaga |
348 |
Q |
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| T |
2823621 |
ggacacgaagttctgctactataataattacaatgtcaaccaaccccgtcatttctgcaagaactgccagagatattggactgccggtggaaccatgaga |
2823720 |
T |
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| Q |
349 |
aatgttccggtgggtgc |
365 |
Q |
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| T |
2823721 |
aacgtaccggtaggtgc |
2823737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 343
Target Start/End: Original strand, 18193381 - 18193495
Alignment:
| Q |
229 |
tgtccacgctgcaacagcgcggacacaaagttctgttactacaataattacaacgtcaatcagccgcgctatttttgcaaggcgtgtcaaagatattgga |
328 |
Q |
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| T |
18193381 |
tgtccaagatgcaaaagcgtagacacaaaattttgttactacaataattacaacgccaaccagccccgacacttctgcaaaaactgtcagagatattgga |
18193480 |
T |
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| Q |
329 |
ctgcaggcggaacca |
343 |
Q |
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|||| || ||||||| |
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| T |
18193481 |
ctgccggaggaacca |
18193495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 293
Target Start/End: Original strand, 18188160 - 18188204
Alignment:
| Q |
249 |
ggacacaaagttctgttactacaataattacaacgtcaatcagcc |
293 |
Q |
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| T |
18188160 |
ggacacaaaattttgttactacaataattacaacgccaaccagcc |
18188204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 353
Target Start/End: Original strand, 3775596 - 3775700
Alignment:
| Q |
249 |
ggacacaaagttctgttactacaataattacaacgtcaatcagccgcgctatttttgcaaggcgtgtcaaagatattggactgcaggcggaaccatgaga |
348 |
Q |
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| T |
3775596 |
ggacaccaaattctgctactacaataactacaatgttaaccaacctcgccatttttgcaagaaatgccagagatactggactgccgggggagccatgaga |
3775695 |
T |
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| Q |
349 |
aatgt |
353 |
Q |
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||||| |
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| T |
3775696 |
aatgt |
3775700 |
T |
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