View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13410_low_4 (Length: 248)
Name: NF13410_low_4
Description: NF13410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13410_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 38577734 - 38577495
Alignment:
| Q |
1 |
ctggcattcttagtttagagcttacctactgtatctgtaatttctagtccactgtgattttggtgttttcaggatgattggttgttcttaatctaataat |
100 |
Q |
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| T |
38577734 |
ctggcattcttagtttagagcttacctactgtatctgtaatttctagtccactgtgattttggtgttttcaggatgattggttgttcttaatctaataat |
38577635 |
T |
|
| Q |
101 |
agtaagtagtaactttgatttaagactgactgtatctttttaacttatattttcttacttaaaggtaagattaaaataaaaacaaagaaagttcgtgcac |
200 |
Q |
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||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38577634 |
agtaagtagtaactttgatttaagactaactgtatatttttaacttatattttcttacttaaaggtaagattaaaataaaaacaaagaaagttcgtgcac |
38577535 |
T |
|
| Q |
201 |
aaagtgaaaatgaaccagtgttcaaacatattagtctgtg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
38577534 |
aaagtgaaaatgaaccagtgttcaaacatattagtctgtg |
38577495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 38590668 - 38590509
Alignment:
| Q |
1 |
ctggcattcttagtttagagcttacctactgtatctgtaatttctagtccactgtgattttggtgttttcaggatgattgg-ttgttcttaatctaataa |
99 |
Q |
| |
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|||||| ||| ||||||||||| ||||||| ||| |||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||| || |
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| T |
38590668 |
ctggcactctgagtttagagctcacctactatatatgtaatttctagtccattgtgattttggcgttttcaggatgattggtttgttcttaatctaaaaa |
38590569 |
T |
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| Q |
100 |
tagtaagtagtaactttgatttaagactgactgtatctttttaacttatattttcttacttaaaggtaa |
168 |
Q |
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| T |
38590568 |
t---------taactttgatttaaaactgactgtaactttttaacttatatttttttaattaaaggtaa |
38590509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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