View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13411_high_1 (Length: 505)
Name: NF13411_high_1
Description: NF13411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13411_high_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 18 - 485
Target Start/End: Original strand, 17591282 - 17591742
Alignment:
| Q |
18 |
catcaaacagaataattttaacatcttcaggcatcaccagagggcggtatccgttagctgcaataatttggacaatgcagaattaaaacagttgcaagcg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
17591282 |
catcaaacagaataattttaacatcttcaggcatcaccagagggcggtatccgatagctgcaataatttggacgatgcagaattaaaacagttgcaagcg |
17591381 |
T |
|
| Q |
118 |
tgacgaaggttaatgcgcgcaatgatacgtctccacgtcaaacttcctagtcatccagaagcaccagactattgcaaaccgttttccaaatcttcaaact |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17591382 |
tgacgaaggttaatgcgcgcaatgatacgtctccacgtcaaacttcgtagtcatccacaagcaccagactattgcaaaccgttttccaaatcttcaaact |
17591481 |
T |
|
| Q |
218 |
caaggagcatatagaaaaaacatatggctaacattctcgttgtgtcgaaagcaaaacacgcaacacctattacgaggggatatgagaacacctttacaac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17591482 |
caaggagcatatagaaaaaacatatggctaacattctcgttgtgtcgaaagcaaaacacgcaacacctattacgaggggatatgagaacacctttacaac |
17591581 |
T |
|
| Q |
318 |
acgcagacatgaactcaacggacatctgatctgcagtctcaaattcctctacaaacaaatggtaacagcttctaacagagaagcctttggatcaatacta |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17591582 |
acgcagacatgaactcaacggacatctgatctgcagtctcaaattcctctacaaacaaatggtaacagcttctaacagagaagcctttggatcaatac-- |
17591679 |
T |
|
| Q |
418 |
atttctctcttgcaggctttataatttcactaattttgacttcgatgtaccttattccatactctttg |
485 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
17591680 |
-tttctctcttgcaggctttataatttcactatttttgact----tgtaccttattccatactctttg |
17591742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University