View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13411_high_10 (Length: 283)
Name: NF13411_high_10
Description: NF13411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13411_high_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 12073108 - 12073041
Alignment:
| Q |
12 |
acatcatcagacacaatgttagcatggtagggaacaaacatgattttgtgaaatatgaacgactaaac |
79 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12073108 |
acatcatcagacacaatgttaatatggtagggaacaaacatgattttgtgaaatatgaacgactaaac |
12073041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 237
Target Start/End: Complemental strand, 12072772 - 12072723
Alignment:
| Q |
185 |
aaacagaaagtttccttttaacattattatagcaaatatattcttaacagaat |
237 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||||| |||| |
|
|
| T |
12072772 |
aaacagaaagtttccttttaaca---ttatagcatatatattcttaacggaat |
12072723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University