View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13411_high_14 (Length: 233)
Name: NF13411_high_14
Description: NF13411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13411_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 35204076 - 35204294
Alignment:
| Q |
1 |
aagcatatagatcctgaaatggtgtggaactgtatgtgggctatgatagtctggctcaaaactgttacacacaataggaattaaactgcaagactcaaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
35204076 |
aagcatatagatcctgaaatggtgtggaactgtatgtgggctatgatagtctggctcaaaactgttacacacaataggaattaagctgcaagactcaaac |
35204175 |
T |
|
| Q |
101 |
ttatatgttgtcatttagtggcagggaacatttcatcatctatattcaattcaggtgcctagaaaccataatgctaggtgcatgacaggttttatcaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35204176 |
ttatatgttgtcatttagtggcagggaacatttcatcatctatattcaattcaggtgcctagaaaccataatgctaggtgcatgacaggttttatcaaca |
35204275 |
T |
|
| Q |
201 |
aacactcatatattttctt |
219 |
Q |
| |
|
||||||||||||||||||| |
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| T |
35204276 |
aacactcatatattttctt |
35204294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 55859550 - 55859371
Alignment:
| Q |
1 |
aagcatatagatcctgaaatggtgtggaactgtatgtgggctatgatagtctggctcaaaactgttacacacaataggaattaaactgcaagactcaaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
55859550 |
aagcatatagatcctgaaatggtgtggaactgtatgtgggctatggtagtctggctcaaaactgttacacacaataagaattaagctgcaagactcaaac |
55859451 |
T |
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| Q |
101 |
ttatatgttgtcatttagtggcagggaacatttcatcatctatattcaattcaggtgcctagaaaccataatgctaggtg |
180 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
55859450 |
ttatatgttgtcatttagtggcagggaacatttcatcatctatattcaattcaggtgcctagaaaccatagtgctaggtg |
55859371 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 29275048 - 29275227
Alignment:
| Q |
1 |
aagcatatagatcctgaaatggtgtggaactgtatgtgggctatgatagtctggctcaaaactgttacacacaataggaattaaactgcaagactcaaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
29275048 |
aagcatatagatcctgaaatggtgtggaactgtatgtgggctatggtagtctggctcaaaactgttacacacaataggaattaagctgcaagactcaaac |
29275147 |
T |
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| Q |
101 |
ttatatgttgtcatttagtggcagggaacatttcatcatctatattcaattcaggtgcctagaaaccataatgctaggtg |
180 |
Q |
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|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
29275148 |
ttatatgttgtcatttagtggcaaggaacatttcatcatctatattcaattcaggtgactagaaaccatagtgctaggtg |
29275227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 10 - 180
Target Start/End: Complemental strand, 46267515 - 46267346
Alignment:
| Q |
10 |
gatcctgaaatggtgtggaactgtatgtgggctatgatagtctggctcaaaactgttacacacaataggaattaaactgcaagactcaaacttatatgtt |
109 |
Q |
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||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
46267515 |
gatcctgaaatggtgtggaactgtacgtggactatgatagtctggctcaaa-ctgttacacacaataggaattaagctgcaagactcaaacttatatgtt |
46267417 |
T |
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| Q |
110 |
gtcatttagtggcagggaacatttcatcatctatattcaattcaggtgcctagaaaccataatgctaggtg |
180 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
46267416 |
gtcatttagtggcagggaacatttcatcatctatattcaatgcaggtgcctagaaaccatagtgctaggtg |
46267346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 3822475 - 3822656
Alignment:
| Q |
1 |
aagcatatagatcctgaaatggtgtggaa-ctgtatgtgggctatgatagtctggctcaaaactgttacacacaatagg-aattaaactgcaagactcaa |
98 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||| |||||| ||||| ||||||| |
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| T |
3822475 |
aagcatatagatcctgaaatggtgtggaaactgtatgtgggctatggtagtctggctcaaaactattacacacaatagggaattaagctgcatgactcaa |
3822574 |
T |
|
| Q |
99 |
acttatatgttgtcatttagtggcagggaacatttcatcatctatattcaattcaggtgcctagaaaccataatgctaggtg |
180 |
Q |
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||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
3822575 |
acttatatgctgtcatttagtggcagggaacatattatcatctatattcaattcaggtgcctagaaactatagtgctaggtg |
3822656 |
T |
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