View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13411_high_2 (Length: 482)
Name: NF13411_high_2
Description: NF13411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13411_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 159 - 465
Target Start/End: Original strand, 2805081 - 2805387
Alignment:
| Q |
159 |
tgtgactaaaatgcgagtgacaggccataattaagcagtagttgannnnnnnnnaagaataattatgtagttgacagtttaatcgaaaaactaacattaa |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2805081 |
tgtgactaaaatgcgagtgacaggccataattaagtagtagttgaattttttttaagaataattatgtagttgacagtttaattgaaaaactaacattaa |
2805180 |
T |
|
| Q |
259 |
tattttattgacagtttaaagaaatttataatttaaaataannnnnnnnnaaaatgatttataatttaggacagagaagtatgtaaataatattgtatac |
358 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2805181 |
tatttcattgacagtttaaagaaatttataatttaaaataatttttttt-aaaatgatttataatttaggacagagaagtatgtaaataatactgtatac |
2805279 |
T |
|
| Q |
359 |
aaaaatttatttaatacattaagaaattctaccaagcattttattaatttcaccatagg-aaaaaatataagtatttctctaactctcacaacaacgttg |
457 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2805280 |
aaaaatttatttaatacattaagaaattctaccaagcattttattaatttcaccataggaaaaaaatataagtatttctctaactctcacaacaacgttg |
2805379 |
T |
|
| Q |
458 |
cgaatttt |
465 |
Q |
| |
|
||||||| |
|
|
| T |
2805380 |
tgaatttt |
2805387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 12 - 154
Target Start/End: Original strand, 2804864 - 2805006
Alignment:
| Q |
12 |
gaacaaagaaactatgatactattactattgaggtatactatctcccnnnnnnnattggtactattgtactaagtactaactagtaagtaactaccgacc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2804864 |
gaacaaagaaactatgatactattactattgatgtatactatcttcctttttttattggtactattgtactaagtactaactagtaagtaactaccgacc |
2804963 |
T |
|
| Q |
112 |
caccaaagcaagacacaaaatcgttgatgtgatcatgttatgt |
154 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2804964 |
caccaaagcaagacacaaaatcgttgatgtggtcatgttatgt |
2805006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University