View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13411_high_3 (Length: 468)
Name: NF13411_high_3
Description: NF13411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13411_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 82 - 463
Target Start/End: Complemental strand, 2008436 - 2008055
Alignment:
| Q |
82 |
ctaaaataaaagccccattagcaatcagtaaaataaaagatcacttgtcacatagccccatggaagcagagatgaagttttcaacaattgatgctttaga |
181 |
Q |
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| T |
2008436 |
ctaaaataaaagccccattagcaatcagtaaaataaaagatcacttgtcacatagccccatggaagcagagatgaagttttcaacaattgatgctttaga |
2008337 |
T |
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| Q |
182 |
ttgccatcagctatcagtcaaagtattgtgaactctccataatatatttagtgaaagacattacgaaacaatttgtagagccttaggatgaacatctaat |
281 |
Q |
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| T |
2008336 |
ttgccatcagctatcagtcaaagtattgtgaattctccataatatatttagtgaaagacattacgaaacaatttgtagagccttaggatgaacatccaat |
2008237 |
T |
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| Q |
282 |
ttgtgggtcataagctatgagactgtaacatctcctatcaaaatcatgcaatcttagaacaccaaaagctccatagaaagacacctcctcatccctacct |
381 |
Q |
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| T |
2008236 |
ttgtgggtcctaagctatgagactgtaacatctcctatcaaaatcatgcaatcttagaacaccaaaaactccatagaaagacacctcctcatccctacct |
2008137 |
T |
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| Q |
382 |
aactagacatgatannnnnnnggtaaaacgggtttacaattccatcaaacatgaatgaaataaaaccatcaaatactgcagt |
463 |
Q |
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| T |
2008136 |
aactagacatgatatttttttggtaaaacgggtttacacttccatcaaacatgaatgaaataaaacaatcaaatactgcagt |
2008055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 284 - 391
Target Start/End: Complemental strand, 2003774 - 2003667
Alignment:
| Q |
284 |
gtgggtcataagctatgagactgtaacatctcctatcaaaatcatgcaatcttagaacaccaaaagctccatagaaagacacc-tcctcatccctaccta |
382 |
Q |
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||||||| |||||||| ||||| |||||||||||||||||||||||| ||||||||||| ||||| || | |||||||||||| |||||||| |||||| |
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| T |
2003774 |
gtgggtcctaagctataagactctaacatctcctatcaaaatcatgcgatcttagaacatcaaaacct-cgtagaaagacaccaccctcatccttaccta |
2003676 |
T |
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| Q |
383 |
actagacat |
391 |
Q |
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|||| |||| |
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| T |
2003675 |
actatacat |
2003667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 2008517 - 2008465
Alignment:
| Q |
18 |
ataaactgagttagaaacaatcatcaataactgataagaaaggaaaatttgtc |
70 |
Q |
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| T |
2008517 |
ataaactgagttagaaacaatcatcaataactgataagaaaggaaaatttgtc |
2008465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 280 - 391
Target Start/End: Complemental strand, 2003238 - 2003127
Alignment:
| Q |
280 |
atttgtgggtcataagctatgagactgtaacatctcctatcaaaatcatgcaatcttagaacaccaaaagctccatagaaagacacc-tcctcatcccta |
378 |
Q |
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||||||||||| ||||| || ||||| ||||||||| |||||||||||||| |||||||||||| ||||| | | |||||||||||| ||||||| || |
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| T |
2003238 |
atttgtgggtcctaagcaataagactttaacatctcttatcaaaatcatgcgatcttagaacactaaaag-ttcgtagaaagacaccaccctcatcatta |
2003140 |
T |
|
| Q |
379 |
cctaactagacat |
391 |
Q |
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|||||||| |||| |
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|
| T |
2003139 |
cctaactatacat |
2003127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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