View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13411_high_4 (Length: 433)
Name: NF13411_high_4
Description: NF13411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13411_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 16 - 417
Target Start/End: Complemental strand, 37352704 - 37352303
Alignment:
| Q |
16 |
aaaagcatttccaaaaacattggtctataaagtacttacatcacgtaagttgtttttaggaatcatgcgcagaatagctttgcgaataacatctgtaggg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37352704 |
aaaagcatttccaaaaacattggtctataaagtacttacatcacgtaagttgtttttaggaatcatgcgcagaatagctttgcgaataacatctgtaggg |
37352605 |
T |
|
| Q |
116 |
tctttggccatctgatccttcagagttctttgcttaaggtggcccacatacctacatgccgctactttatgtcagaatagtacgaatcatgccaaaagat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
37352604 |
tctttggccatctgatccttcagagttctttgcttaaggtggcccacatacctacatgtcgctactttatgtcagaatagtacgcatcatgccaaaagat |
37352505 |
T |
|
| Q |
216 |
tgttgcacaagaaaccatatacaaaacaacaattataaaagtggaggtaaaatttcttagaagataggcatttaaatctgaataaaaccatttgatttat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
37352504 |
tgttgcacaagaaaccatatacaaaacaacaattataaaagtggaggtaaaatttcttagaagacaggcatttaaatctgaataaaaccatttgatttat |
37352405 |
T |
|
| Q |
316 |
aagaagcctaaaattataaatacttctttggttctaacaaaatgtattaaatgaagtaacgtaaagaacgtgccctgtatgccagtagtagaccttgtct |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37352404 |
aagaagcctaaaattataaatacttctttggttctaacaaaatgtattaaatgaagtaatgtaaagaacgtgccctgtatgccagtagtagaccttgtct |
37352305 |
T |
|
| Q |
416 |
gt |
417 |
Q |
| |
|
|| |
|
|
| T |
37352304 |
gt |
37352303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University