View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13411_high_6 (Length: 347)

Name: NF13411_high_6
Description: NF13411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13411_high_6
NF13411_high_6
[»] chr2 (16 HSPs)
chr2 (67-333)||(12072415-12072681)
chr2 (68-294)||(33280202-33280428)
chr2 (101-193)||(36059926-36060020)
chr2 (150-221)||(1418909-1418984)
chr2 (151-210)||(15457501-15457564)
chr2 (151-193)||(18916075-18916117)
chr2 (151-221)||(38985698-38985772)
chr2 (150-220)||(39081398-39081472)
chr2 (152-221)||(18172929-18173002)
chr2 (150-186)||(38599402-38599438)
chr2 (151-185)||(21747259-21747293)
chr2 (152-210)||(6530661-6530723)
chr2 (38-67)||(12072301-12072330)
chr2 (152-210)||(13020425-13020487)
chr2 (152-193)||(19367440-19367481)
chr2 (152-210)||(25222325-25222387)
[»] chr3 (17 HSPs)
chr3 (68-301)||(4207268-4207500)
chr3 (84-300)||(21660428-21660644)
chr3 (68-301)||(35202631-35202864)
chr3 (99-221)||(42009251-42009379)
chr3 (150-221)||(27303187-27303262)
chr3 (150-222)||(46904742-46904818)
chr3 (152-193)||(29387775-29387816)
chr3 (105-193)||(54430505-54430595)
chr3 (150-221)||(7767063-7767138)
chr3 (150-221)||(36538175-36538250)
chr3 (150-193)||(43905864-43905907)
chr3 (150-221)||(50677303-50677378)
chr3 (152-210)||(8364174-8364236)
chr3 (152-193)||(13401461-13401502)
chr3 (152-181)||(23164605-23164634)
chr3 (152-193)||(24252622-24252663)
chr3 (152-193)||(51939577-51939618)
[»] chr6 (21 HSPs)
chr6 (68-295)||(31234829-31235056)
chr6 (68-294)||(31243966-31244191)
chr6 (68-264)||(32055979-32056173)
chr6 (68-271)||(15035725-15035927)
chr6 (68-301)||(1327511-1327744)
chr6 (188-304)||(1722125-1722242)
chr6 (99-219)||(3748559-3748685)
chr6 (152-210)||(6360762-6360823)
chr6 (151-221)||(1690622-1690696)
chr6 (68-121)||(1722243-1722296)
chr6 (152-210)||(7525166-7525228)
chr6 (235-294)||(28847698-28847757)
chr6 (152-211)||(2618357-2618420)
chr6 (214-300)||(10670053-10670138)
chr6 (152-210)||(57690-57752)
chr6 (152-193)||(628116-628157)
chr6 (227-295)||(1112424-1112493)
chr6 (227-284)||(2356637-2356693)
chr6 (152-193)||(12614737-12614778)
chr6 (152-210)||(29401142-29401204)
chr6 (150-219)||(30915357-30915430)
[»] chr7 (18 HSPs)
chr7 (68-291)||(2445699-2445920)
chr7 (152-221)||(18895386-18895459)
chr7 (104-221)||(9479079-9479202)
chr7 (150-221)||(26633363-26633438)
chr7 (104-195)||(40738010-40738103)
chr7 (152-193)||(4099970-4100011)
chr7 (152-210)||(8358294-8358356)
chr7 (227-284)||(25859186-25859242)
chr7 (152-210)||(44894029-44894091)
chr7 (152-221)||(18015571-18015644)
chr7 (149-193)||(30739122-30739166)
chr7 (99-221)||(32956722-32956850)
chr7 (151-193)||(26282563-26282605)
chr7 (151-193)||(40001717-40001759)
chr7 (151-221)||(1366010-1366084)
chr7 (152-181)||(6380117-6380146)
chr7 (152-210)||(11672588-11672650)
chr7 (150-186)||(36438379-36438415)
[»] chr5 (23 HSPs)
chr5 (68-233)||(524830-524994)
chr5 (97-220)||(37029026-37029153)
chr5 (99-210)||(13423811-13423928)
chr5 (152-221)||(29156192-29156265)
chr5 (150-222)||(16515524-16515600)
chr5 (154-221)||(7390389-7390460)
chr5 (151-221)||(17513925-17513999)
chr5 (101-193)||(138093-138187)
chr5 (151-221)||(931381-931450)
chr5 (227-301)||(35147146-35147220)
chr5 (152-210)||(13656212-13656274)
chr5 (152-193)||(19099335-19099376)
chr5 (151-221)||(43511619-43511693)
chr5 (153-193)||(33281677-33281717)
chr5 (150-184)||(5829385-5829419)
chr5 (151-193)||(10591294-10591336)
chr5 (227-301)||(11245485-11245559)
chr5 (227-268)||(7225657-7225698)
chr5 (152-189)||(13474632-13474669)
chr5 (151-221)||(20975986-20976060)
chr5 (234-302)||(17535687-17535755)
chr5 (152-221)||(18873459-18873532)
chr5 (252-300)||(22868163-22868211)
[»] chr8 (22 HSPs)
chr8 (68-163)||(7773491-7773586)
chr8 (68-163)||(7790131-7790226)
chr8 (68-163)||(7810717-7810812)
chr8 (151-292)||(5971679-5971819)
chr8 (153-222)||(7773605-7773674)
chr8 (153-222)||(7790245-7790314)
chr8 (153-222)||(7810831-7810900)
chr8 (101-195)||(42951788-42951884)
chr8 (152-193)||(43968091-43968132)
chr8 (152-221)||(3628736-3628809)
chr8 (101-222)||(32098166-32098293)
chr8 (151-221)||(12531560-12531634)
chr8 (151-221)||(34523940-34524014)
chr8 (229-301)||(4837109-4837180)
chr8 (229-301)||(4842554-4842625)
chr8 (151-221)||(33452792-33452867)
chr8 (152-210)||(3471602-3471664)
chr8 (152-210)||(7858087-7858149)
chr8 (227-284)||(8341173-8341229)
chr8 (152-185)||(27074576-27074609)
chr8 (151-225)||(39697923-39698001)
chr8 (150-187)||(42076108-42076145)
[»] chr1 (18 HSPs)
chr1 (106-302)||(32810262-32810459)
chr1 (151-210)||(5560484-5560547)
chr1 (101-193)||(15441239-15441333)
chr1 (101-181)||(27703562-27703644)
chr1 (152-193)||(12884158-12884199)
chr1 (151-221)||(12971407-12971481)
chr1 (227-301)||(52127551-52127625)
chr1 (151-193)||(3907472-3907514)
chr1 (240-302)||(7380298-7380360)
chr1 (152-211)||(18127936-18127999)
chr1 (150-221)||(24556806-24556881)
chr1 (151-193)||(30004928-30004970)
chr1 (152-181)||(28885704-28885733)
chr1 (227-284)||(48660258-48660314)
chr1 (152-210)||(50552497-50552559)
chr1 (99-181)||(52055499-52055583)
chr1 (150-186)||(44836749-44836785)
chr1 (150-186)||(50371134-50371170)
[»] scaffold0482 (2 HSPs)
scaffold0482 (68-163)||(1687-1782)
scaffold0482 (153-222)||(1599-1668)
[»] chr4 (9 HSPs)
chr4 (134-290)||(41305688-41305838)
chr4 (101-221)||(43154777-43154903)
chr4 (150-221)||(35653969-35654044)
chr4 (101-221)||(21791536-21791662)
chr4 (101-222)||(22423633-22423760)
chr4 (152-221)||(45172634-45172707)
chr4 (150-193)||(10575544-10575587)
chr4 (152-193)||(28463609-28463650)
chr4 (227-291)||(16061386-16061450)
[»] scaffold0126 (1 HSPs)
scaffold0126 (152-193)||(16712-16753)


Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 67 - 333
Target Start/End: Original strand, 12072415 - 12072681
Alignment:
Q  67 ataaccaccaccaatccaacatacatctatcctttagactctagttctcttttttggacaaaagtttaatgttatcaagccattcaatttgtataatcac 166  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| | || ||||||||||| ||||||||||| |||||||||    
T  12072415 ataaccaccaccaatccaacatacatctatcctttagactgtagttctcctttttggacaagaattcaatgttatcaaaccattcaatttatataatcac 12072514  T
Q  167 ttaatcaatcaatttaaaaagttattttaaagaatcacaacaattctttcttttttacagaattgtgtttttattttattagaggcctatttctattatg 266  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  12072515 ttaatcaatcaatttaaaaagttatttcaaagaatcacaacaattccttctttttcacagaattgtgtttttattttattagaggcctatttctattatg 12072614  T
Q  267 agagtcgagccttcaattttataggaacgaccctgatatctctcatataaatactcttatgattact 333  Q
    ||||||||||||||||||||||| |||||||| |  ||||||||||||||||||||||||| |||||    
T  12072615 agagtcgagccttcaattttatatgaacgaccttagtatctctcatataaatactcttatgtttact 12072681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 68 - 294
Target Start/End: Complemental strand, 33280428 - 33280202
Alignment:
Q  68 taaccaccaccaatccaacatacatctatcctttagactctagttctcttttttggacaaaagtttaatgttatcaagccattcaatttgtataatcact 167  Q
    |||||||||| ||||||||||||||||||  |||| ||| ||||| || ||| ||||||| | || || | ||||||  ||| |||||| |||||| |||    
T  33280428 taaccaccacaaatccaacatacatctattatttatactttagttatcctttctggacaagaattcaacgctatcaaatcatccaatttctataattact 33280329  T
Q  168 taatcaatcaatttaaaaagttattttaaagaatcacaacaattctttcttttttacagaattgtgtttttattttattagaggcctatttctattatga 267  Q
    | |||||||||||||||||  |||||||||||||||||  ||   | | |||||  || |||| ||||||||||||||||||| | ||||| ||||||||    
T  33280328 tgatcaatcaatttaaaaaactattttaaagaatcacactaaaattatatttttcgcataattttgtttttattttattagagacatatttttattatga 33280229  T
Q  268 gagtcgagccttcaattttataggaac 294  Q
    ||| |||| ||||||||||| ||||||    
T  33280228 gagccgagtcttcaattttacaggaac 33280202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 193
Target Start/End: Complemental strand, 36060020 - 36059926
Alignment:
Q  101 tagactctagttctcttttttggacaaaagtttaatgttatcaagccat--tcaatttgtataatcacttaatcaatcaatttaaaaagttattt 193  Q
    ||||||||||||||  ||||| ||||||| ||| ||| |||||| |||   |||||||||||||||||||||||| | ||||||||||| |||||    
T  36060020 tagactctagttctactttttagacaaaaatttgatgctatcaaaccaccatcaatttgtataatcacttaatcagttaatttaaaaagctattt 36059926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 221
Target Start/End: Original strand, 1418909 - 1418984
Alignment:
Q  150 tcaatttgtataatcacttaatcaatcaatttaaaaagttat----tttaaagaatcacaacaattctttcttttt 221  Q
    |||||||||||||||||||||||| |||||||  |||| |||    || ||||||||||||||||| |||||||||    
T  1418909 tcaatttgtataatcacttaatcagtcaatttgtaaagctatttcattgaaagaatcacaacaattatttcttttt 1418984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 210
Target Start/End: Original strand, 15457501 - 15457564
Alignment:
Q  151 caatttgtataatcacttaatcaatcaatttaaaaagttatttt----aaagaatcacaacaat 210  Q
    ||||||||||||||||||||||| ||||||| ||||| ||||||    ||||||||||||||||    
T  15457501 caatttgtataatcacttaatcagtcaatttgaaaagctattttattgaaagaatcacaacaat 15457564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 193
Target Start/End: Complemental strand, 18916117 - 18916075
Alignment:
Q  151 caatttgtataatcacttaatcaatcaatttaaaaagttattt 193  Q
    ||||||||||||||||||||||||||||||| ||||| |||||    
T  18916117 caatttgtataatcacttaatcaatcaatttgaaaagctattt 18916075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 151 - 221
Target Start/End: Complemental strand, 38985772 - 38985698
Alignment:
Q  151 caatttgtataatcacttaatcaatcaatttaaaaagttat----tttaaagaatcacaacaattctttcttttt 221  Q
    ||||||||||||||| ||||||||||||||| ||||| |||    || ||||||||||||||||  |||||||||    
T  38985772 caatttgtataatcatttaatcaatcaatttgaaaagctatttcattgaaagaatcacaacaatcatttcttttt 38985698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 150 - 220
Target Start/End: Original strand, 39081398 - 39081472
Alignment:
Q  150 tcaatttgtataatcacttaatcaatcaatttaaaaagttat----tttaaagaatcacaacaattctttctttt 220  Q
    |||||||||||||||||||||||| ||||||| ||||| |||    || ||||||| ||||||||| ||||||||    
T  39081398 tcaatttgtataatcacttaatcagtcaatttgaaaagctatttcattgaaagaattacaacaattatttctttt 39081472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 18173002 - 18172929
Alignment:
Q  152 aatttgtataatcacttaatcaatcaatttaaaaagttattt----taaagaatcacaacaattctttcttttt 221  Q
    |||||||||||||||||||||| ||||||| ||||| |||||     ||||||||||||||||  |||||||||    
T  18173002 aatttgtataatcacttaatcactcaatttgaaaagctatttcatcgaaagaatcacaacaatcatttcttttt 18172929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 186
Target Start/End: Original strand, 38599402 - 38599438
Alignment:
Q  150 tcaatttgtataatcacttaatcaatcaatttaaaaa 186  Q
    |||||||||||||||||||||||||||||||| ||||    
T  38599402 tcaatttgtataatcacttaatcaatcaatttgaaaa 38599438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 185
Target Start/End: Complemental strand, 21747293 - 21747259
Alignment:
Q  151 caatttgtataatcacttaatcaatcaatttaaaa 185  Q
    ||||||||||||||||||||||| |||||||||||    
T  21747293 caatttgtataatcacttaatcagtcaatttaaaa 21747259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 210
Target Start/End: Original strand, 6530661 - 6530723
Alignment:
Q  152 aatttgtataatcacttaatcaatcaatttaaaaagttatttta----aagaatcacaacaat 210  Q
    |||||||||||||||||||||| ||||||| ||||| ||||| |    |||||||||||||||    
T  6530661 aatttgtataatcacttaatcagtcaatttgaaaaggtatttcattgaaagaatcacaacaat 6530723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 67
Target Start/End: Original strand, 12072301 - 12072330
Alignment:
Q  38 catgttcttgtttcttatttcttccaacaa 67  Q
    ||||||||||||||||||||||||||||||    
T  12072301 catgttcttgtttcttatttcttccaacaa 12072330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 210
Target Start/End: Original strand, 13020425 - 13020487
Alignment:
Q  152 aatttgtataatcacttaatcaatcaatttaaaaagttat----tttaaagaatcacaacaat 210  Q
    |||||||||||||||||||||| |||||||  |||| |||    |||||||||||||||||||    
T  13020425 aatttgtataatcacttaatcagtcaatttggaaagctatttcatttaaagaatcacaacaat 13020487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 193
Target Start/End: Complemental strand, 19367481 - 19367440
Alignment:
Q  152 aatttgtataatcacttaatcaatcaatttaaaaagttattt 193  Q
    |||||||||||||||||||||| ||||||| ||||| |||||    
T  19367481 aatttgtataatcacttaatcagtcaatttgaaaagctattt 19367440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 210
Target Start/End: Original strand, 25222325 - 25222387
Alignment:
Q  152 aatttgtataatcacttaatcaatcaatttaaaaagttatttta----aagaatcacaacaat 210  Q
    |||||||||||||||||||| | |||||||| |||||||||| |    |||||||||||||||    
T  25222325 aatttgtataatcacttaattagtcaatttagaaagttatttcattgaaagaatcacaacaat 25222387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 126; Significance: 6e-65; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 68 - 301
Target Start/End: Complemental strand, 4207500 - 4207268
Alignment:
Q  68 taaccaccaccaatccaacatacatctatcctttagactctagttctcttttttggacaaaagtttaatgttatcaagccattcaatttgtataatcact 167  Q
    ||||||||||||||| ||||| ||| |||| ||| ||||||||||||| ||||||||||| | || |||| |||||| |||| |||||||||||||||||    
T  4207500 taaccaccaccaatcgaacatgcatatatcatttcgactctagttctcctttttggacaagaattcaatgctatcaaaccatccaatttgtataatcact 4207401  T
Q  168 taatcaatcaatttaaaaagttattttaaagaatcacaacaattctttcttttttacagaattgtgtttttattttattagaggcctatttctattatga 267  Q
    |||||| |||||||  |||| ||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||  || |||||| ||||||||    
T  4207400 taatcattcaatttggaaagatatttcaaagaatcacaacaatcctttcttttttgcagaattgtgtttttattttattaagggtctattt-tattatga 4207302  T
Q  268 gagtcgagccttcaattttataggaacgaccctg 301  Q
    ||||||||||| |||||||||||| || ||||||    
T  4207301 gagtcgagcctccaattttatagggacaaccctg 4207268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 84 - 300
Target Start/End: Original strand, 21660428 - 21660644
Alignment:
Q  84 aacatacatctatcctttagactctagttctcttttttggacaaaagtttaatgttatcaagccattcaatttgtataatcacttaatcaatcaatttaa 183  Q
    ||||||||||||||||||||||| || ||||| ||||||||||| | ||||||| |||||| ||||  ||| ||||||||||||||||||||||||||||    
T  21660428 aacatacatctatcctttagactatatttctcctttttggacaagaatttaatgctatcaaaccatcaaatctgtataatcacttaatcaatcaatttaa 21660527  T
Q  184 aaagttattttaaagaatcacaacaattctttcttttttacagaattgtgtttttattttattagaggcctatttctattatgagagtcgagccttcaat 283  Q
    ||| |||||| |||||||||||| ||| ||||||||||  || ||||||||||||||||||||||| || ||||| ||||||||||| |||| ||  |||    
T  21660528 aaaattatttcaaagaatcacaataatcctttctttttcgcataattgtgtttttattttattagatgcttatttttattatgagagccgagtctctaat 21660627  T
Q  284 tttataggaacgaccct 300  Q
    || |||  |||||||||    
T  21660628 ttcataaaaacgaccct 21660644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 68 - 301
Target Start/End: Complemental strand, 35202864 - 35202631
Alignment:
Q  68 taaccaccaccaatccaacatacatctatcctttagactctagttctcttttttggacaaaagtttaatgttatcaagccattcaatttgtataatcact 167  Q
    ||||||||||||||||||||| |||||||||| |||||| ||||| || |||||||| || | |||||| ||||||| |||| ||||||||||||| |||    
T  35202864 taaccaccaccaatccaacattcatctatcctatagactttagttatcctttttggataagaatttaattttatcaaaccatccaatttgtataattact 35202765  T
Q  168 taatcaatcaatttaaaaagttattttaaagaatcacaacaattctttcttttttacagaattgtgtttttattttattagaggcctatttctattatga 267  Q
    |||||| |||||||  ||||  |||| ||| |||||||||||| ||||||||||| ||||| |||||||||| |||||||  ||||||||| ||||||||    
T  35202764 taatcagtcaattttgaaagcaatttcaaaaaatcacaacaatactttcttttttgcagaactgtgtttttaatttattaagggcctatttttattatga 35202665  T
Q  268 gagtcgagccttcaattttataggaacgaccctg 301  Q
    ||  ||| | | |||||| ||||| |||||||||    
T  35202664 gaaccgaacatccaatttcatagggacgaccctg 35202631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 99 - 221
Target Start/End: Complemental strand, 42009379 - 42009251
Alignment:
Q  99 tttagactctagttctcttttttggacaaaagtttaatgttatcaagccat--tcaatttgtataatcacttaatcaatcaatttaaaaagttat----t 192  Q
    |||||||| |||||||  ||| |||||| || ||| ||| |||||| |||   |||||||||||||||||||||||| |||||||||||||||||    |    
T  42009379 tttagactttagttctactttctggacataaatttgatgctatcaaaccaccatcaatttgtataatcacttaatcagtcaatttaaaaagttatttcat 42009280  T
Q  193 ttaaagaatcacaacaattctttcttttt 221  Q
    | ||||||||||||||||| |||||||||    
T  42009279 tgaaagaatcacaacaattatttcttttt 42009251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 221
Target Start/End: Original strand, 27303187 - 27303262
Alignment:
Q  150 tcaatttgtataatcacttaatcaatcaatttaaaaagttat----tttaaagaatcacaacaattctttcttttt 221  Q
    |||||||||||||||||||||||||||||||| ||||| |||    || ||||||||||||||||| |||||||||    
T  27303187 tcaatttgtataatcacttaatcaatcaatttgaaaagctatttcattgaaagaatcacaacaattatttcttttt 27303262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 222
Target Start/End: Original strand, 46904742 - 46904818
Alignment:
Q  150 tcaatttgtataatcacttaatcaatcaatttaaaaagttat----tttaaagaatcacaacaattctttctttttt 222  Q
    |||||||||||||||||||||||| ||||||||||||  |||    || ||||||||||||||||| ||||||||||    
T  46904742 tcaatttgtataatcacttaatcagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttt 46904818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 193
Target Start/End: Complemental strand, 29387816 - 29387775
Alignment:
Q  152 aatttgtataatcacttaatcaatcaatttaaaaagttattt 193  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  29387816 aatttgtataatcacttaatcaatcaatttgaaaagttattt 29387775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 193
Target Start/End: Original strand, 54430505 - 54430595
Alignment:
Q  105 ctctagttctcttttttggacaaaagtttaatgttatcaagccattc--aatttgtataatcacttaatcaatcaatttaaaaagttattt 193  Q
    ||||||||||| |||||| ||| || | | |||||||||| |||  |  |||||||||||||||||||||| ||||||| |||||||||||    
T  54430505 ctctagttctcctttttgtacataaatctgatgttatcaaaccacccctaatttgtataatcacttaatcagtcaatttgaaaagttattt 54430595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 221
Target Start/End: Original strand, 7767063 - 7767138
Alignment:
Q  150 tcaatttgtataatcacttaatcaatcaatttaaaaagttat----tttaaagaatcacaacaattctttcttttt 221  Q
    |||||||||||||||||||||||| ||||||| ||||| |||    || ||||||||||||||||| ||| |||||    
T  7767063 tcaatttgtataatcacttaatcagtcaatttgaaaagctatttcattgaaagaatcacaacaattattttttttt 7767138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 221
Target Start/End: Complemental strand, 36538250 - 36538175
Alignment:
Q  150 tcaatttgtataatcacttaatcaatcaatttaaaaagttat----tttaaagaatcacaacaattctttcttttt 221  Q
    |||||||||||||||||||||||| ||||||| ||||  |||    || ||||||||||||||||| |||||||||    
T  36538250 tcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttcttttt 36538175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 150 - 193
Target Start/End: Complemental strand, 43905907 - 43905864
Alignment:
Q  150 tcaatttgtataatcacttaatcaatcaatttaaaaagttattt 193  Q
    |||||||||||||||||| ||||| ||||||| |||||||||||    
T  43905907 tcaatttgtataatcactcaatcagtcaatttgaaaagttattt 43905864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 221
Target Start/End: Complemental strand, 50677378 - 50677303
Alignment:
Q  150 tcaatttgtataatcacttaatcaatcaatttaaaaagttat----tttaaagaatcacaacaattctttcttttt 221  Q
    |||||||||||||||||||||||| ||||||| ||||  |||    || ||| ||||||||||||| |||||||||    
T  50677378 tcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaacaatcacaacaattatttcttttt 50677303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 210
Target Start/End: Original strand, 8364174 - 8364236
Alignment:
Q  152 aatttgtataatcacttaatcaatcaatttaaaaagttatttta----aagaatcacaacaat 210  Q
    |||||||||||||||||||||| |||||||  |||||||||| |    |||||||||||||||    
T  8364174 aatttgtataatcacttaatcagtcaatttggaaagttatttcattgaaagaatcacaacaat 8364236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 193
Target Start/End: Original strand, 13401461 - 13401502
Alignment:
Q  152 aatttgtataatcacttaatcaatcaatttaaaaagttattt 193  Q
    |||||||||||||||||||||| ||||||| ||||| |||||    
T  13401461 aatttgtataatcacttaatcagtcaatttgaaaagctattt 13401502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 181
Target Start/End: Complemental strand, 23164634 - 23164605
Alignment:
Q  152 aatttgtataatcacttaatcaatcaattt 181  Q
    ||||||||||||||||||||||||||||||    
T  23164634 aatttgtataatcacttaatcaatcaattt 23164605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 193
Target Start/End: Original strand, 24252622 - 24252663
Alignment:
Q  152 aatttgtataatcacttaatcaatcaatttaaaaagttattt 193  Q
    |||||||||||||||||||||| |||||||  ||||||||||    
T  24252622 aatttgtataatcacttaatcagtcaatttggaaagttattt 24252663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 193
Target Start/End: Complemental strand, 51939618 - 51939577
Alignment:
Q  152 aatttgtataatcacttaatcaatcaatttaaaaagttattt 193  Q
    |||||||||||||||||||||| ||||||| ||||| |||||    
T  51939618 aatttgtataatcacttaatcagtcaatttgaaaagctattt 51939577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 116; Significance: 6e-59; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 68 - 295
Target Start/End: Original strand, 31234829 - 31235056
Alignment:
Q  68 taaccaccaccaatccaacatacatctatcctttagactctagttctcttttttggacaaaagtttaatgttatcaagccattcaatttgtataatcact 167  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||  ||||| ||||| | || |||| |||||| |||| |||||||||||||||||    
T  31234829 taaccaccacaaatccaacatacatttatcctttagactctagttctactttttagacaagaattcaatgctatcaaaccatccaatttgtataatcact 31234928  T
Q  168 taatcaatcaatttaaaaagttattttaaagaatcacaacaattctttcttttttacagaattgtgtttttattttattagaggcctatttctattatga 267  Q
    |||||||||||||| ||||| ||||| |||||||||||| |||  | | |||||  |||||||||||||||||||||||| | |||||||| |||||| |    
T  31234929 taatcaatcaatttgaaaagctatttcaaagaatcacaataatgttatatttttcgcagaattgtgtttttattttattacatgcctatttttattataa 31235028  T
Q  268 gagtcgagccttcaattttataggaacg 295  Q
     |||||||||| |||||| |||||||||    
T  31235029 aagtcgagcctacaatttcataggaacg 31235056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 68 - 294
Target Start/End: Original strand, 31243966 - 31244191
Alignment:
Q  68 taaccaccaccaatccaacatacatctatcctttagactctagttctcttttttggacaaaagtttaatgttatcaagccattcaatttgtataatcact 167  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||  ||||| ||||| | || |||| |||||| |||| |||||||||||||||||    
T  31243966 taaccaccacaaatccaacatacatttatcctttagactctagttctactttttagacaagaattcaatgctatcaaaccatccaatttgtataatcact 31244065  T
Q  168 taatcaatcaatttaaaaagttattttaaagaatcacaacaattctttcttttttacagaattgtgtttttattttattagaggcctatttctattatga 267  Q
    ||||||||||| || ||||| ||||| |||||||||||| |||  | | ||||| ||||||||||||||||||||||||| | |||||||| ||||||||    
T  31244066 taatcaatcaa-ttgaaaagctatttcaaagaatcacaataatgttatatttttcacagaattgtgtttttattttattacatgcctatttttattatga 31244164  T
Q  268 gagtcgagccttcaattttataggaac 294  Q
     |||||||||| |||||| ||||||||    
T  31244165 aagtcgagcctacaatttcataggaac 31244191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 68 - 264
Target Start/End: Original strand, 32055979 - 32056173
Alignment:
Q  68 taaccaccaccaatccaacatacatctatcctttagactctagttctcttttttggacaaaagtttaatgttatcaagccattcaatttgtataatcact 167  Q
    ||||||||||| || |||||| |||||||||| || |||||||||||| |||||| |||| | || ||||||||||| |||| ||| |||||||||||||    
T  32055979 taaccaccacctattcaacatccatctatcctctaaactctagttctcatttttgaacaagaattcaatgttatcaaaccatccaa-ttgtataatcact 32056077  T
Q  168 taatcaatcaatttaaaaagttattttaaagaatcacaacaattctttcttttttacagaattgtgtttttattttattagaggcctatttctatta 264  Q
    |||||| ||||||||||||| || |||||  ||||| || ||| ||||||||||| ||||||||||||||||||||||||| | ||||||| |||||    
T  32056078 taatcactcaatttaaaaagcta-tttaattaatcataataatcctttcttttttgcagaattgtgtttttattttattagggacctatttttatta 32056173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 68 - 271
Target Start/End: Complemental strand, 15035927 - 15035725
Alignment:
Q  68 taaccaccaccaatccaacatacatctatcctttagactctagttctcttttttggacaaaagtttaatgttatcaagccattcaa-tttgtataatcac 166  Q
    ||||||||||||||||||||| |||||||||| |||||| |||||||| ||||||||||| | || |||| |||||| |||||||| ||||||||||||     
T  15035927 taaccaccaccaatccaacattcatctatcctatagactttagttctcctttttggacaagaattcaatgctatcaaaccattcaattttgtataatcat 15035828  T
Q  167 ttaatcaatcaatttaaaaagttattttaaagaatcacaacaattctttcttttttacagaattgtgtttttattttattagaggcctatttctattatg 266  Q
    |||| || ||||||| ||||| |  || ||||||||||||||||  |||||||||   | | |||||||||||||||||||| | ||||||| ||||||     
T  15035827 ttaaccagtcaatttgaaaagctgattcaaagaatcacaacaat--tttctttttcgaatatttgtgtttttattttattagggacctatttttattatt 15035730  T
Q  267 agagt 271  Q
    |||||    
T  15035729 agagt 15035725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 68 - 301
Target Start/End: Original strand, 1327511 - 1327744
Alignment:
Q  68 taaccaccaccaatccaacatacatctatcctttagactcta-gttctcttttttggacaaaagtttaatgttatcaagccattcaatttgtataatcac 166  Q
    |||||||||| |||| ||||||||||||| ||||| || |   |||||| ||||||||||| | || |||| |||||  | || ||||||||||||||||    
T  1327511 taaccaccacaaatctaacatacatctattctttataccccctgttctcctttttggacaataattcaatgctatcattc-atccaatttgtataatcac 1327609  T
Q  167 ttaatcaatcaatttaaaaagttattttaaagaatcacaacaattctttcttttttacagaattgtgtttttattttattagaggcctatttctattatg 266  Q
    |||||||||||||||| |||  ||||| ||| |||||||| |||  | |||||||  || |||| ||||||||||||||||| ||| ||||| |||||||    
T  1327610 ttaatcaatcaatttagaaaactatttcaaataatcacaataatattatctttttcgcataattttgtttttattttattaggggcatatttgtattatg 1327709  T
Q  267 agagtcgagccttcaattttataggaacgaccctg 301  Q
    |||||||||||| |||||| |||  ||||||||||    
T  1327710 agagtcgagcctccaatttcataaaaacgaccctg 1327744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 188 - 304
Target Start/End: Complemental strand, 1722242 - 1722125
Alignment:
Q  188 ttattttaaagaatcacaacaattctttctttttta-cagaattgtgtttttattttattagaggcctatttctattatgagagtcgagccttcaatttt 286  Q
    |||||| ||||||| ||||| || |||||||||||  || |||||||||||||||||||||||| ||||||| ||||||||||||| || ||  |||||     
T  1722242 ttatttcaaagaatgacaacgatcctttctttttttgcaaaattgtgtttttattttattagagacctatttttattatgagagtcaagtctctaatttc 1722143  T
Q  287 ataggaacgaccctgata 304  Q
    ||||| ||||||||||||    
T  1722142 atagggacgaccctgata 1722125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 219
Target Start/End: Complemental strand, 3748685 - 3748559
Alignment:
Q  99 tttagactctagttctcttttttggacaaaagtttaatgttatcaa---gccattcaatttgtataatcacttaatcaatcaatttaaaaagttat---- 191  Q
    |||||| |||||||||  |||||||||| || ||| ||| ||||||   ||||| ||||||||||||||||||||||||||||||| ||||| |||        
T  3748685 tttagattctagttctactttttggacataaatttgatgctatcaaaccgccat-caatttgtataatcacttaatcaatcaatttgaaaagctatttca 3748587  T
Q  192 tttaaagaatcacaacaattctttcttt 219  Q
    || ||||||||||||||||| |||||||    
T  3748586 ttgaaagaatcacaacaattatttcttt 3748559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 210
Target Start/End: Original strand, 6360762 - 6360823
Alignment:
Q  152 aatttgtataatcacttaatcaatcaatttaaaaagttat---tttaaagaatcacaacaat 210  Q
    |||||||||||||||||||||| ||||||| |||||||||   || ||||||||||||||||    
T  6360762 aatttgtataatcacttaatcagtcaatttgaaaagttattcattgaaagaatcacaacaat 6360823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 151 - 221
Target Start/End: Complemental strand, 1690696 - 1690622
Alignment:
Q  151 caatttgtataatcacttaatcaatcaatttaaaaagttat----tttaaagaatcacaacaattctttcttttt 221  Q
    |||||||||||||||||| |||||||||||| |||| ||||    || ||||||||||||||||  |||||||||    
T  1690696 caatttgtataatcacttgatcaatcaatttgaaaatttatttcattgaaagaatcacaacaatcatttcttttt 1690622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 1722296 - 1722243
Alignment:
Q  68 taaccaccaccaatccaacatacatctatcctttagactctagttctctttttt 121  Q
    ||||||| |||||||||| || ||||||||||||||||||| |||||| |||||    
T  1722296 taaccactaccaatccaatatccatctatcctttagactctggttctccttttt 1722243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 152 - 210
Target Start/End: Complemental strand, 7525228 - 7525166
Alignment:
Q  152 aatttgtataatcacttaatcaatcaatttaaaaagttatttt----aaagaatcacaacaat 210  Q
    |||||||||||||||||||||| |||||||  |||||||||||    ||||||||||||||||    
T  7525228 aatttgtataatcacttaatcagtcaatttggaaagttattttattgaaagaatcacaacaat 7525166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 235 - 294
Target Start/End: Complemental strand, 28847757 - 28847698
Alignment:
Q  235 ttttattttattagaggcctatttctattatgagagtcgagccttcaattttataggaac 294  Q
    |||| |||||||||  |||||||| || |||||||||||||||||||||||  |||||||    
T  28847757 tttttttttattaggagcctatttttactatgagagtcgagccttcaatttcgtaggaac 28847698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 211
Target Start/End: Original strand, 2618357 - 2618420
Alignment:
Q  152 aatttgtataatcacttaatcaatcaatttaaaaagttat----tttaaagaatcacaacaatt 211  Q
    |||||||||||||||||||||| ||||||| ||||| |||    || |||||||||||||||||    
T  2618357 aatttgtataatcacttaatcagtcaatttgaaaagctatttcattgaaagaatcacaacaatt 2618420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 300
Target Start/End: Original strand, 10670053 - 10670138
Alignment:
Q  214 ttcttttttacagaattgtgtttttattttattagaggcctatttctattatgagagtcgagccttcaattttataggaacgaccct 300  Q
    |||||||||  | |||||||||||| ||||||||  ||||||||| || |||||||||||||||| || ||| ||||| ||| ||||    
T  10670053 ttctttttttaaaaattgtgttttt-ttttattaagggcctatttttactatgagagtcgagcctccagtttcatagggacggccct 10670138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 210
Target Start/End: Original strand, 57690 - 57752
Alignment:
Q  152 aatttgtataatcacttaatcaatcaatttaaaaagttatttta----aagaatcacaacaat 210  Q
    |||||||||||||||||||||| |||||||| |||| ||||| |    |||||||||||||||    
T  57690 aatttgtataatcacttaatcagtcaatttagaaagctatttcattcaaagaatcacaacaat 57752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 193
Target Start/End: Complemental strand, 628157 - 628116
Alignment:
Q  152 aatttgtataatcacttaatcaatcaatttaaaaagttattt 193  Q
    |||||||||||||||||||||| ||||||| ||||| |||||    
T  628157 aatttgtataatcacttaatcagtcaatttgaaaagctattt 628116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 295
Target Start/End: Complemental strand, 1112493 - 1112424
Alignment:
Q  227 aattgtgt-ttttattttattagaggcctatttctattatgagagtcgagccttcaattttataggaacg 295  Q
    |||||||| |||| |||||||| || ||||||| || || ||||||||||||| || |||||||||||||    
T  1112493 aattgtgtatttttttttattaaagacctatttttactacgagagtcgagcctccagttttataggaacg 1112424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 284
Target Start/End: Complemental strand, 2356693 - 2356637
Alignment:
Q  227 aattgtgtttttattttattagaggcctatttctattatgagagtcgagccttcaatt 284  Q
    |||| ||||||||||||||||| ||||||||| || |||||||| ||||||| |||||    
T  2356693 aattatgtttttattttattaggggcctatttata-tatgagagccgagcctccaatt 2356637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 193
Target Start/End: Complemental strand, 12614778 - 12614737
Alignment:
Q  152 aatttgtataatcacttaatcaatcaatttaaaaagttattt 193  Q
    |||||||||||||||||||||| ||||||| ||||| |||||    
T  12614778 aatttgtataatcacttaatcagtcaatttgaaaagctattt 12614737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 210
Target Start/End: Original strand, 29401142 - 29401204
Alignment:
Q  152 aatttgtataatcacttaatcaatcaatttaaaaagttatttta----aagaatcacaacaat 210  Q
    |||| ||||||||||||||||| ||||||| ||||||||||| |    |||||||||||||||    
T  29401142 aattagtataatcacttaatcagtcaatttgaaaagttatttcattgaaagaatcacaacaat 29401204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 30915430 - 30915357
Alignment:
Q  150 tcaatttgtataatcacttaatcaatcaatttaaaaag----ttattttaaagaatcacaacaattctttcttt 219  Q
    |||||||||||||| ||||||||| ||||||| |||||    ||| || ||||||||||||||||  |||||||    
T  30915430 tcaatttgtataattacttaatcagtcaatttgaaaagctatttaattgaaagaatcacaacaatcatttcttt 30915357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 7e-43; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 68 - 291
Target Start/End: Complemental strand, 2445920 - 2445699
Alignment:
Q  68 taaccaccaccaatccaacatacatctatcctttagactctagttctcttttttggacaaaagtttaatgttatcaagccattcaatttgtataatcact 167  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||  ||||||  |||| | ||| ||| |||||| ||||||||||||||||||||||    
T  2445920 taaccaccaccaatccaacttacatctatcctctagactctagttccttttttt--acaagaatttgatgctatcaaaccattcaatttgtataatcact 2445823  T
Q  168 taatcaatcaatttaaaaagttattttaaagaatcacaacaattctttcttttttacagaattgtgtttttattttattagaggcctatttctattatga 267  Q
    ||||| ||||| |||||| ||||||| ||||||||||| ||||| ||| |||||   | ||||  |||||||||| ||||||  ||||||| ||| ||||    
T  2445822 taatctatcaaattaaaaggttatttcaaagaatcacaccaattatttatttttcgtataatttagtttttatttgattagaaacctatttttataatga 2445723  T
Q  268 gagtcgagccttcaattttatagg 291  Q
    ||||| | | | ||||||||||||    
T  2445722 gagtccatcatccaattttatagg 2445699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 18895459 - 18895386
Alignment:
Q  152 aatttgtataatcacttaatcaatcaatttaaaaagttat----tttaaagaatcacaacaattctttcttttt 221  Q
    |||||||||||||| ||||||| |||||||||||||||||    || ||||||||||||||||| |||| ||||    
T  18895459 aatttgtataatcaattaatcagtcaatttaaaaagttatttcattgaaagaatcacaacaattatttcctttt 18895386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 221
Target Start/End: Original strand, 9479079 - 9479202
Alignment:
Q  104 actctagttctcttttttggacaaaagtttaatgttatcaagccat--tcaatttgtataatcacttaatcaatcaatttaaaaagttat----tttaaa 197  Q
    |||||||||||  ||| |||||| || ||| ||| |||||| |||   |||||||||||||| ||||||||| ||||||||||||  |||    || |||    
T  9479079 actctagttctactttctggacataaatttgatgctatcaaaccaccatcaatttgtataattacttaatcagtcaatttaaaaaactatttcgttgaaa 9479178  T
Q  198 gaatcacaacaattctttcttttt 221  Q
    |||||||||||||| |||||||||    
T  9479179 gaatcacaacaattatttcttttt 9479202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 221
Target Start/End: Original strand, 26633363 - 26633438
Alignment:
Q  150 tcaatttgtataatcacttaatcaatcaatttaaaaagttat----tttaaagaatcacaacaattctttcttttt 221  Q
    |||||||||||||||||||||||| ||||||| ||||| |||    || ||||||||||||||||  |||||||||    
T  26633363 tcaatttgtataatcacttaatcagtcaatttgaaaagctatttcattgaaagaatcacaacaatcatttcttttt 26633438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 195
Target Start/End: Complemental strand, 40738103 - 40738010
Alignment:
Q  104 actctagttctcttttttggacaaaagtttaatgttatcaagccat--tcaatttgtataatcacttaatcaatcaatttaaaaagttatttta 195  Q
    |||||||||||  ||||| |||| || ||| ||| |||||| |||   |||||||||||||| ||||||||| ||||||||||||| |||||||    
T  40738103 actctagttctacttttttgacataaatttgatgctatcaaaccaccatcaatttgtataattacttaatcagtcaatttaaaaagctatttta 40738010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 152 - 193
Target Start/End: Original strand, 4099970 - 4100011
Alignment:
Q  152 aatttgtataatcacttaatcaatcaatttaaaaagttattt 193  Q
    |||||||||||||||||||||||||||||| ||||| |||||    
T  4099970 aatttgtataatcacttaatcaatcaatttgaaaagctattt 4100011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 152 - 210
Target Start/End: Complemental strand, 8358356 - 8358294
Alignment:
Q  152 aatttgtataatcacttaatcaatcaatttaaaaagttat----tttaaagaatcacaacaat 210  Q
    ||||| |||||||||||||||| |||||||||||||||||    || ||||||||||||||||    
T  8358356 aatttatataatcacttaatcagtcaatttaaaaagttatctcattgaaagaatcacaacaat 8358294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 227 - 284
Target Start/End: Original strand, 25859186 - 25859242
Alignment:
Q  227 aattgtgtttttattttattagaggcctatttctattatgagagtcgagccttcaatt 284  Q
    |||| ||||||||||||||||| ||||||||| || |||||||||||||||| |||||    
T  25859186 aattatgtttttattttattaggggcctattttta-tatgagagtcgagcctccaatt 25859242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 152 - 210
Target Start/End: Complemental strand, 44894091 - 44894029
Alignment:
Q  152 aatttgtataatcacttaatcaatcaatttaaaaagttatttt----aaagaatcacaacaat 210  Q
    ||||||||||||||||||||||||||||||  |||| ||||||    ||||||||||||||||    
T  44894091 aatttgtataatcacttaatcaatcaatttggaaagctattttattgaaagaatcacaacaat 44894029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 18015644 - 18015571
Alignment:
Q  152 aatttgtataatcacttaatcaatcaatttaaaaagttat----tttaaagaatcacaacaattctttcttttt 221  Q
    ||||||||||||||||||||||||||||||  |||| |||    || ||||||||||||||||| ||| |||||    
T  18015644 aatttgtataatcacttaatcaatcaatttggaaagctatttcattgaaagaatcacaacaattattttttttt 18015571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 193
Target Start/End: Original strand, 30739122 - 30739166
Alignment:
Q  149 ttcaatttgtataatcacttaatcaatcaatttaaaaagttattt 193  Q
    |||||||| |||||||||||||||| ||||||| |||||||||||    
T  30739122 ttcaatttttataatcacttaatcagtcaatttgaaaagttattt 30739166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 221
Target Start/End: Original strand, 32956722 - 32956850
Alignment:
Q  99 tttagactctagttctcttttttggacaaaagtttaatgttatcaagccattc--aatttgtataatcacttaatcaatcaatttaaaaagttatttta- 195  Q
    ||||||||||||||||| ||| |||||| || | | ||| |||||| |||  |  ||||| |||||||| ||||||| |||||||| |||||||||| |     
T  32956722 tttagactctagttctcctttctggacataaatctgatgctatcaaaccacccccaatttttataatcatttaatcagtcaatttataaagttatttcat 32956821  T
Q  196 ---aagaatcacaacaattctttcttttt 221  Q
       |||||||||||||||  |||||||||    
T  32956822 tgaaagaatcacaacaatgatttcttttt 32956850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 193
Target Start/End: Complemental strand, 26282605 - 26282563
Alignment:
Q  151 caatttgtataatcacttaatcaatcaatttaaaaagttattt 193  Q
    ||||||||||||||||||||||| ||||||| ||||| |||||    
T  26282605 caatttgtataatcacttaatcagtcaatttgaaaagctattt 26282563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 193
Target Start/End: Complemental strand, 40001759 - 40001717
Alignment:
Q  151 caatttgtataatcacttaatcaatcaatttaaaaagttattt 193  Q
    ||||||||||||||||||||||| ||||||| ||||| |||||    
T  40001759 caatttgtataatcacttaatcagtcaatttgaaaagctattt 40001717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 221
Target Start/End: Original strand, 1366010 - 1366084
Alignment:
Q  151 caatttgtataatcacttaatcaatcaatttaaaaagttattt----taaagaatcacaacaattctttcttttt 221  Q
    ||||| ||||||| ||||||||| ||||||| |||||||||||     ||||||||||||||||  |||||||||    
T  1366010 caattggtataatgacttaatcagtcaatttgaaaagttatttcatagaaagaatcacaacaatcatttcttttt 1366084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 181
Target Start/End: Complemental strand, 6380146 - 6380117
Alignment:
Q  152 aatttgtataatcacttaatcaatcaattt 181  Q
    ||||||||||||||||||||||||||||||    
T  6380146 aatttgtataatcacttaatcaatcaattt 6380117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 210
Target Start/End: Original strand, 11672588 - 11672650
Alignment:
Q  152 aatttgtataatcacttaatcaatcaatttaaaaagttattttaa----agaatcacaacaat 210  Q
    |||||||||||||||||||||| |||||||  |||||||||| ||    ||||||||||||||    
T  11672588 aatttgtataatcacttaatcagtcaatttggaaagttatttcaatgaaagaatcacaacaat 11672650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 36438415 - 36438379
Alignment:
Q  150 tcaatttgtataatcacttaatcaatcaatttaaaaa 186  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  36438415 tcaatttgtataatcacttaatcagtcaatttgaaaa 36438379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 5e-41; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 68 - 233
Target Start/End: Complemental strand, 524994 - 524830
Alignment:
Q  68 taaccaccaccaatccaacatacatctatcctttagactctagttctcttttttggacaaaagtttaatgttatcaagccattcaatttgtataatcact 167  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| || | || |||| | |||| ||||  ||||| ||||||||||    
T  524994 taaccaccaccaatccaacacacatctatcctttagactctagttctcctttttggaaaagaattcaatgctctcaaaccatctaattt-tataatcact 524896  T
Q  168 taatcaatcaatttaaaaagttattttaaagaatcacaacaattctttcttttttacagaattgtg 233  Q
    |||||||||||||||||||  ||||||||||||||||||  || ||||||||||  ||||||||||    
T  524895 taatcaatcaatttaaaaaactattttaaagaatcacaattatcctttctttttcgcagaattgtg 524830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 97 - 220
Target Start/End: Complemental strand, 37029153 - 37029026
Alignment:
Q  97 cctttagactctagttctcttttttggacaaaagtttaat----gttatcaagccattcaatttgtataatcacttaatcaatcaatttaaaaagttatt 192  Q
    ||||||||||||||||||| ||||| ||  ||| || |||    | ||||||  ||| ||||||||||||||||||||||||||||||||||||| ||||    
T  37029153 cctttagactctagttctcctttttagatcaaaattcaattcttgctatcaaatcatccaatttgtataatcacttaatcaatcaatttaaaaagctatt 37029054  T
Q  193 ttaaagaatcacaacaattctttctttt 220  Q
    | ||||||| |||| ||| |||||||||    
T  37029053 tcaaagaattacaataatcctttctttt 37029026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 99 - 210
Target Start/End: Original strand, 13423811 - 13423928
Alignment:
Q  99 tttagactctagttctcttttttggacaaaagtttaatgttatcaagccattc--aatttgtataatcacttaatcaatcaatttaaaaagttatttta- 195  Q
    |||||||||||||||||||||||| ||| || |   ||  |||||| ||||||  ||||||||||||||||||||||||||||||| |||| ||||| |     
T  13423811 tttagactctagttctcttttttgtacataaatcggatcctatcaaaccattcctaatttgtataatcacttaatcaatcaatttagaaagctatttcat 13423910  T
Q  196 ---aagaatcacaacaat 210  Q
       |||||||||||||||    
T  13423911 tgaaagaatcacaacaat 13423928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 29156192 - 29156265
Alignment:
Q  152 aatttgtataatcacttaatcaatcaatttaaaaagttat----tttaaagaatcacaacaattctttcttttt 221  Q
    |||||||||||||||||||||| |||||||||||||||||    || ||||||||||||||||  |||||||||    
T  29156192 aatttgtataatcacttaatcagtcaatttaaaaagttatttcattgaaagaatcacaacaatcatttcttttt 29156265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 222
Target Start/End: Original strand, 16515524 - 16515600
Alignment:
Q  150 tcaatttgtataatcacttaatcaatcaatttaaaaagttatttt----aaagaatcacaacaattctttctttttt 222  Q
    |||||||  ||||||||||||||||||||||| |||| |||||||    ||||||||||||||||| ||||||||||    
T  16515524 tcaattttaataatcacttaatcaatcaatttgaaaaattattttattgaaagaatcacaacaattatttctttttt 16515600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 154 - 221
Target Start/End: Complemental strand, 7390460 - 7390389
Alignment:
Q  154 tttgtataatcacttaatcaatcaatttaaaaagttattt----taaagaatcacaacaattctttcttttt 221  Q
    |||||||||||||||||||| |||||||||||||||||||     |||||||||| |||||| |||||||||    
T  7390460 tttgtataatcacttaatcagtcaatttaaaaagttatttcatcgaaagaatcacgacaattatttcttttt 7390389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 221
Target Start/End: Complemental strand, 17513999 - 17513925
Alignment:
Q  151 caatttgtataatcacttaatcaatcaatttaaaaagttatt----ttaaagaatcacaacaattctttcttttt 221  Q
    ||||||||||||||||||||||| ||||||| ||||||||||    | ||||||||||||||||  |||||||||    
T  17513999 caatttgtataatcacttaatcagtcaatttgaaaagttatttcactgaaagaatcacaacaatcatttcttttt 17513925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 193
Target Start/End: Original strand, 138093 - 138187
Alignment:
Q  101 tagactctagttctcttttttggacaaaagtttaatgttatcaagccat--tcaatttgtataatcacttaatcaatcaatttaaaaagttattt 193  Q
    ||||||||||||||  |||| ||||| || ||| ||| |||||| |||   |||||||||||||||||||||||| ||||||| ||||| |||||    
T  138093 tagactctagttctacttttcggacataaatttgatgctatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaagctattt 138187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 221
Target Start/End: Original strand, 931381 - 931450
Alignment:
Q  151 caatttgtataatcacttaatcaatcaatttaaaaagttattttaaagaatcacaacaattctttcttttt 221  Q
    ||||||||||||||||||||||| |||||||| |||| || || |||||||||||| |||  |||||||||    
T  931381 caatttgtataatcacttaatcagtcaatttagaaagcta-ttgaaagaatcacaataatcatttcttttt 931450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 301
Target Start/End: Original strand, 35147146 - 35147220
Alignment:
Q  227 aattgtgtttttattttattagaggcctatttctattatgagagtcgagccttcaattttataggaacgaccctg 301  Q
    ||||||||||||||||||| |||||||||||| || | | ||||||||||||  |||| |||||| ||| |||||    
T  35147146 aattgtgtttttattttatgagaggcctatttttaatgttagagtcgagcctctaattctatagggacggccctg 35147220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 152 - 210
Target Start/End: Original strand, 13656212 - 13656274
Alignment:
Q  152 aatttgtataatcacttaatcaatcaatttaaaaagttatttta----aagaatcacaacaat 210  Q
    |||||||||||||||||||||| ||||||| ||||||||||| |    |||||||||||||||    
T  13656212 aatttgtataatcacttaatcagtcaatttgaaaagttatttcattgaaagaatcacaacaat 13656274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 152 - 193
Target Start/End: Complemental strand, 19099376 - 19099335
Alignment:
Q  152 aatttgtataatcacttaatcaatcaatttaaaaagttattt 193  Q
    |||||||||||||||||||||| ||||||||||||| |||||    
T  19099376 aatttgtataatcacttaatcagtcaatttaaaaagctattt 19099335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 151 - 221
Target Start/End: Original strand, 43511619 - 43511693
Alignment:
Q  151 caatttgtataatcacttaatcaatcaatttaaaaagttattt----taaagaatcacaacaattctttcttttt 221  Q
    ||||||||||||||||||||||| ||||||| ||||| |||||     ||||||||||||||||  |||||||||    
T  43511619 caatttgtataatcacttaatcagtcaatttgaaaagctatttcatggaaagaatcacaacaatcatttcttttt 43511693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 33281677 - 33281717
Alignment:
Q  153 atttgtataatcacttaatcaatcaatttaaaaagttattt 193  Q
    ||||||||||||||||||| | |||||||||||||||||||    
T  33281677 atttgtataatcacttaattagtcaatttaaaaagttattt 33281717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 184
Target Start/End: Original strand, 5829385 - 5829419
Alignment:
Q  150 tcaatttgtataatcacttaatcaatcaatttaaa 184  Q
    |||||||||||||||||||||||| ||||||||||    
T  5829385 tcaatttgtataatcacttaatcagtcaatttaaa 5829419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 193
Target Start/End: Complemental strand, 10591336 - 10591294
Alignment:
Q  151 caatttgtataatcacttaatcaatcaatttaaaaagttattt 193  Q
    ||||||||||||||||||||||| | ||||| |||||||||||    
T  10591336 caatttgtataatcacttaatcagttaatttgaaaagttattt 10591294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 301
Target Start/End: Original strand, 11245485 - 11245559
Alignment:
Q  227 aattgtgtttttattttattagaggcctatttctattatgagagtcgagccttcaattttataggaacgaccctg 301  Q
    |||||||| ||| ||||| |||||||| |||| || ||||||||  || ||| |||||| |||||||||||||||    
T  11245485 aattgtgtgttttttttactagaggccaatttttactatgagagctgaacctccaatttcataggaacgaccctg 11245559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 268
Target Start/End: Original strand, 7225657 - 7225698
Alignment:
Q  227 aattgtgtttttattttattagaggcctatttctattatgag 268  Q
    |||||||||||||||||| ||| ||||||||| |||||||||    
T  7225657 aattgtgtttttattttactaggggcctatttttattatgag 7225698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 189
Target Start/End: Original strand, 13474632 - 13474669
Alignment:
Q  152 aatttgtataatcacttaatcaatcaatttaaaaagtt 189  Q
    |||||||||||||||||||||| ||||||| |||||||    
T  13474632 aatttgtataatcacttaatcagtcaatttgaaaagtt 13474669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 221
Target Start/End: Original strand, 20975986 - 20976060
Alignment:
Q  151 caatttgtataatcacttaatcaatcaatttaaaaagttat----tttaaagaatcacaacaattctttcttttt 221  Q
    ||||||||||||||| ||||||| ||||||| ||||| |||    || ||||||||||||||||  |||||||||    
T  20975986 caatttgtataatcatttaatcagtcaatttgaaaagctatttcattgaaagaatcacaacaatcatttcttttt 20976060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 302
Target Start/End: Complemental strand, 17535755 - 17535687
Alignment:
Q  234 tttttattttattagaggcctatttctattatgagagtcgagccttcaattttataggaacgaccctga 302  Q
    ||||||||||||  | || |||||| ||||||||||||||| ||| |||| | ||||| ||||||||||    
T  17535755 tttttattttatatggggtctatttttattatgagagtcgaacctccaatctcatagggacgaccctga 17535687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 18873459 - 18873532
Alignment:
Q  152 aatttgtataatcacttaatcaatcaatttaaaaagttatttta----aagaatcacaacaattctttcttttt 221  Q
    ||||||||||| ||||||||||  |||||| ||||| ||||| |    |||||||||||||||| |||||||||    
T  18873459 aatttgtataaccacttaatcagccaatttgaaaagctatttcattgaaagaatcacaacaattatttcttttt 18873532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 300
Target Start/End: Original strand, 22868163 - 22868211
Alignment:
Q  252 cctatttctattatgagagtcgagccttcaattttataggaacgaccct 300  Q
    ||||||| |||||||||||| ||||||||| ||| ||||| ||||||||    
T  22868163 cctatttttattatgagagttgagccttcagtttcatagggacgaccct 22868211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 6e-28; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 68 - 163
Target Start/End: Original strand, 7773491 - 7773586
Alignment:
Q  68 taaccaccaccaatccaacatacatctatcctttagactctagttctcttttttggacaaaagtttaatgttatcaagccattcaatttgtataat 163  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| | ||| ||| |||||| |||| |||||||||||||    
T  7773491 taaccaccaccaatccaacatacatctatcctttatactctagttctcctttttggacaagaattttatgctatcaaaccatccaatttgtataat 7773586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 68 - 163
Target Start/End: Original strand, 7790131 - 7790226
Alignment:
Q  68 taaccaccaccaatccaacatacatctatcctttagactctagttctcttttttggacaaaagtttaatgttatcaagccattcaatttgtataat 163  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||| ||| ||||||||| ||| ||  |||||| |||| |||||||||||||    
T  7790131 taaccaccaccaatccaacatacatctatcctttatactgtagttctcctttgtggacaaaaattttattctatcaaaccatccaatttgtataat 7790226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 68 - 163
Target Start/End: Original strand, 7810717 - 7810812
Alignment:
Q  68 taaccaccaccaatccaacatacatctatcctttagactctagttctcttttttggacaaaagtttaatgttatcaagccattcaatttgtataat 163  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||| ||| ||||||||| ||| ||  |||||| |||| |||||||||||||    
T  7810717 taaccaccaccaatccaacatacatctatcctttatactgtagttctcctttgtggacaaaaattttattctatcaaaccatccaatttgtataat 7810812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 151 - 292
Target Start/End: Complemental strand, 5971819 - 5971679
Alignment:
Q  151 caatttgtataatcacttaatcaatcaatttaaaaagttattttaaagaatcacaacaattctttcttttttacagaattgtgtttttattttattagag 250  Q
    |||||| ||| |||||||||||| ||||||||||||| ||||||||||||||||||||||   |||| |||| || |||| |  ||||||||||||| ||    
T  5971819 caatttctatcatcacttaatcagtcaatttaaaaagctattttaaagaatcacaacaatcagttctcttttgcataatttttattttattttatta-ag 5971721  T
Q  251 gcctatttctattatgagagtcgagccttcaattttatagga 292  Q
    |  ||||| |||||||||||||  |||| |||||| ||||||    
T  5971720 gattatttttattatgagagtcaggcctccaatttcatagga 5971679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 153 - 222
Target Start/End: Original strand, 7773605 - 7773674
Alignment:
Q  153 atttgtataatcacttaatcaatcaatttaaaaagttattttaaagaatcacaacaattctttctttttt 222  Q
    ||||||||||||||||| | ||| |||||||||| |||||| |||||||||||| |||||||| ||||||    
T  7773605 atttgtataatcacttagtgaattaatttaaaaaattatttcaaagaatcacaataattctttgtttttt 7773674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 222
Target Start/End: Original strand, 7790245 - 7790314
Alignment:
Q  153 atttgtataatcacttaatcaatcaatttaaaaagttattttaaagaatcacaacaattctttctttttt 222  Q
    ||||||||||||||||| | ||| |||||||||| |||||| |||||||||||| ||| |||| ||||||    
T  7790245 atttgtataatcacttagtgaattaatttaaaaaattatttcaaagaatcacaataatcctttgtttttt 7790314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 222
Target Start/End: Original strand, 7810831 - 7810900
Alignment:
Q  153 atttgtataatcacttaatcaatcaatttaaaaagttattttaaagaatcacaacaattctttctttttt 222  Q
    ||||||||||||||||| | ||| |||||||||| |||||| |||||||||||| ||| |||| ||||||    
T  7810831 atttgtataatcacttagtgaattaatttaaaaaattatttcaaagaatcacaataatcctttgtttttt 7810900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 195
Target Start/End: Complemental strand, 42951884 - 42951788
Alignment:
Q  101 tagactctagttctcttttttggacaaaagtttaatgttatcaagccattc--aatttgtataatcacttaatcaatcaatttaaaaagttatttta 195  Q
    ||||||||||||||| |||||| ||| || |  |||  |||||| ||| ||  |||||||||||||||||||||| ||||||| |||||||||||||    
T  42951884 tagactctagttctcatttttgtacataaatcgaatcctatcaaaccactcctaatttgtataatcacttaatcagtcaatttgaaaagttatttta 42951788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 193
Target Start/End: Complemental strand, 43968132 - 43968091
Alignment:
Q  152 aatttgtataatcacttaatcaatcaatttaaaaagttattt 193  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  43968132 aatttgtataatcacttaatcaatcaatttgaaaagttattt 43968091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 3628809 - 3628736
Alignment:
Q  152 aatttgtataatcacttaatcaatcaatttaaaaagttat----tttaaagaatcacaacaattctttcttttt 221  Q
    ||||||||||||||| |||||| ||||||| |||||||||    || ||||||||||||||||| |||||||||    
T  3628809 aatttgtataatcacataatcagtcaatttgaaaagttatttcattgaaagaatcacaacaattatttcttttt 3628736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 222
Target Start/End: Complemental strand, 32098293 - 32098166
Alignment:
Q  101 tagactctagttctcttttttggacaaaagtttaatgttatcaagccattc--aatttgtataatcacttaatcaatcaatttaaaaagttat----ttt 194  Q
    |||||||||||| || |||||||||| || ||| ||| |||||| ||| ||  ||||||||| |||||||||||| |||||||  |||  |||    ||     
T  32098293 tagactctagttatcctttttggacataaatttgatgctatcaaaccactcttaatttgtatgatcacttaatcagtcaatttggaaaactatttcattg 32098194  T
Q  195 aaagaatcacaacaattctttctttttt 222  Q
    ||||||||||||||||| ||||||||||    
T  32098193 aaagaatcacaacaattatttctttttt 32098166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 151 - 221
Target Start/End: Original strand, 12531560 - 12531634
Alignment:
Q  151 caatttgtataatcacttaatcaatcaatttaaaaagttat----tttaaagaatcacaacaattctttcttttt 221  Q
    ||||||||||||||||||||||| ||||||||||||  |||    || ||||||||||||||||  |||||||||    
T  12531560 caatttgtataatcacttaatcagtcaatttaaaaatctatttcattgaaagaatcacaacaatcatttcttttt 12531634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 151 - 221
Target Start/End: Complemental strand, 34524014 - 34523940
Alignment:
Q  151 caatttgtataatcacttaatcaatcaatttaaaaagttat----tttaaagaatcacaacaattctttcttttt 221  Q
    ||||||||||||||||||||||| ||||||| ||||| |||    || ||||||||||||||||  |||||||||    
T  34524014 caatttgtataatcacttaatcagtcaatttgaaaagctatttcattgaaagaatcacaacaatcatttcttttt 34523940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 301
Target Start/End: Original strand, 4837109 - 4837180
Alignment:
Q  229 ttgtgtttttattttattagaggcctatttctattatgagagtcgagccttcaattttataggaacgaccctg 301  Q
    ||||||||||||||||| || ||||||||| |||| ||||||||| | ||||||||| ||||| ||| |||||    
T  4837109 ttgtgtttttattttataaggggcctattt-tattttgagagtcgggtcttcaatttgatagggacggccctg 4837180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 301
Target Start/End: Original strand, 4842554 - 4842625
Alignment:
Q  229 ttgtgtttttattttattagaggcctatttctattatgagagtcgagccttcaattttataggaacgaccctg 301  Q
    ||||||||||||||||| || ||||||||| |||| ||||||||| | ||||||||| ||||| ||| |||||    
T  4842554 ttgtgtttttattttataaggggcctattt-tattttgagagtcgggtcttcaatttgatagggacggccctg 4842625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 151 - 221
Target Start/End: Original strand, 33452792 - 33452867
Alignment:
Q  151 caatttgtataatcacttaatcaatcaatttaaaaagttatttt-----aaagaatcacaacaattctttcttttt 221  Q
    |||||| |||||||||| ||| ||||||||| ||||||||||||     ||||||||||||||||  |||||||||    
T  33452792 caatttatataatcactcaattaatcaatttgaaaagttattttaataaaaagaatcacaacaatcatttcttttt 33452867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 210
Target Start/End: Original strand, 3471602 - 3471664
Alignment:
Q  152 aatttgtataatcacttaatcaatcaatttaaaaagttatttta----aagaatcacaacaat 210  Q
    |||||||||||||||||||||| ||||||| ||||| ||||| |    |||||||||||||||    
T  3471602 aatttgtataatcacttaatcagtcaatttgaaaagctatttcattgaaagaatcacaacaat 3471664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 210
Target Start/End: Original strand, 7858087 - 7858149
Alignment:
Q  152 aatttgtataatcacttaatcaatcaatttaaaaagtta----ttttaaagaatcacaacaat 210  Q
    |||||||||||||||||||||| |||||||  |||||||     |||||||||||||||||||    
T  7858087 aatttgtataatcacttaatcagtcaatttggaaagttaattcatttaaagaatcacaacaat 7858149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 284
Target Start/End: Complemental strand, 8341229 - 8341173
Alignment:
Q  227 aattgtgtttttattttattagaggcctatttctattatgagagtcgagccttcaatt 284  Q
    |||| ||||||||||||||||| ||||||||| || |||||||| ||||||| |||||    
T  8341229 aattatgtttttattttattaggggcctattttta-tatgagagccgagcctccaatt 8341173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 185
Target Start/End: Original strand, 27074576 - 27074609
Alignment:
Q  152 aatttgtataatcacttaatcaatcaatttaaaa 185  Q
    |||||||||||||||||||||| |||||||||||    
T  27074576 aatttgtataatcacttaatcagtcaatttaaaa 27074609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 225
Target Start/End: Complemental strand, 39698001 - 39697923
Alignment:
Q  151 caatttgtataatcacttaatcaatcaatttaaaaagttatttta----aagaatcacaacaattctttcttttttaca 225  Q
    |||||||||| |||| ||||| | ||||||| ||||| ||||| |    |||||||||||||||| |||||||||||||    
T  39698001 caatttgtatgatcatttaattagtcaatttgaaaagctatttcattgaaagaatcacaacaattatttcttttttaca 39697923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 187
Target Start/End: Original strand, 42076108 - 42076145
Alignment:
Q  150 tcaatttgtataatcacttaatcaatcaatttaaaaag 187  Q
    |||||||||||||| ||||||||||||||||| |||||    
T  42076108 tcaatttgtataataacttaatcaatcaatttgaaaag 42076145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 106 - 302
Target Start/End: Complemental strand, 32810459 - 32810262
Alignment:
Q  106 tctagttctcttttttggacaaaagtttaatgttatcaagccattcaatttgtataatcacttaatcaatcaatttaaaaagttattttaaagaatcaca 205  Q
    |||||||||  ||||||||||| | ||||||| ||| || | ||  |||||| ||||||||||||||||||||||| ||||| ||||| ||||||||  |    
T  32810459 tctagttcttctttttggacaagaatttaatgctattaaactatctaatttgaataatcacttaatcaatcaatttgaaaagctatttcaaagaatccta 32810360  T
Q  206 acaattctttctttttt-acagaattgtgtttttattttattagaggcctatttctattatgagagtcgagccttcaattttataggaacgaccctga 302  Q
    | ||| |||||||||||  || ||||||||||||||||||| |  ||| ||||| ||||||||||   |||| | |||||| |||| |||||||||||    
T  32810359 ataatcctttcttttttcgcataattgtgtttttattttataaagggcttatttttattatgagaaatgagcttccaatttcatagaaacgaccctga 32810262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 151 - 210
Target Start/End: Original strand, 5560484 - 5560547
Alignment:
Q  151 caatttgtataatcacttaatcaatcaatttaaaaagttatttta----aagaatcacaacaat 210  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |    |||||||||||||||    
T  5560484 caatttgtataatcacttaatcagtcaatttaaaaagttatttcattgaaagaatcacaacaat 5560547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 193
Target Start/End: Original strand, 15441239 - 15441333
Alignment:
Q  101 tagactctagttctcttttttggacaaaagtttaatgttatcaagcca--ttcaatttgtataatcacttaatcaatcaatttaaaaagttattt 193  Q
    ||||||||||||||| ||| | |||| || | ||||| |||||| |||  | ||||||||||||||||||||||| |||||||| |||| |||||    
T  15441239 tagactctagttctcctttctagacataaatataatgctatcaaaccacctacaatttgtataatcacttaatcactcaatttataaagctattt 15441333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 181
Target Start/End: Complemental strand, 27703644 - 27703562
Alignment:
Q  101 tagactctagttctcttttttggacaaaagtttaatgttatcaagccattc--aatttgtataatcacttaatcaatcaattt 181  Q
    |||||||||||||||||||||| ||| || ||| ||| |||||| |||  |  |||||||||||||||||||||| |||||||    
T  27703644 tagactctagttctcttttttgaacataaatttgatgctatcaaaccacccccaatttgtataatcacttaatcagtcaattt 27703562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 152 - 193
Target Start/End: Complemental strand, 12884199 - 12884158
Alignment:
Q  152 aatttgtataatcacttaatcaatcaatttaaaaagttattt 193  Q
    |||||||||||||||||||||| ||||||||||||| |||||    
T  12884199 aatttgtataatcacttaatcagtcaatttaaaaagctattt 12884158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 151 - 221
Target Start/End: Original strand, 12971407 - 12971481
Alignment:
Q  151 caatttgtataatcacttaatcaatcaatttaaaaagttattt----taaagaatcacaacaattctttcttttt 221  Q
    ||||||||||||||||||||||| ||||||| ||||| |||||     ||||||||||||||||  |||||||||    
T  12971407 caatttgtataatcacttaatcagtcaatttgaaaagctatttcatcgaaagaatcacaacaatcatttcttttt 12971481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 301
Target Start/End: Complemental strand, 52127625 - 52127551
Alignment:
Q  227 aattgtgtttttatttt-attagaggcctatttctattatgagagtcgagccttcaattttataggaacgaccctg 301  Q
    |||| |||||||||||| ||||||||||||| | ||| || |||||||||||| ||| | ||||||||||||||||    
T  52127625 aattatgtttttatttttattagaggcctatctttat-attagagtcgagcctccaaatatataggaacgaccctg 52127551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 193
Target Start/End: Original strand, 3907472 - 3907514
Alignment:
Q  151 caatttgtataatcacttaatcaatcaatttaaaaagttattt 193  Q
    ||||||||||||||| ||||||||||||||| |||| ||||||    
T  3907472 caatttgtataatcatttaatcaatcaatttgaaaaattattt 3907514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 302
Target Start/End: Complemental strand, 7380360 - 7380298
Alignment:
Q  240 ttttattagaggcctatttctattatgagagtcgagccttcaattttataggaacgaccctga 302  Q
    ||||||||| ||||||||| || || ||||| ||||||| |||||||||||| ||| ||||||    
T  7380360 ttttattaggggcctatttttactacgagagacgagcctccaattttatagggacggccctga 7380298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 211
Target Start/End: Complemental strand, 18127999 - 18127936
Alignment:
Q  152 aatttgtataatcacttaatcaatcaatttaaaaagttatttta----aagaatcacaacaatt 211  Q
    |||||||||||||||||||||| ||||||| ||||| ||||| |    ||||||||||||||||    
T  18127999 aatttgtataatcacttaatcagtcaatttgaaaagctatttcattgcaagaatcacaacaatt 18127936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 221
Target Start/End: Original strand, 24556806 - 24556881
Alignment:
Q  150 tcaatttgtataatcacttaatcaatcaatttaaaaagttat----tttaaagaatcacaacaattctttcttttt 221  Q
    |||||||| ||||||||||||| | ||||||| ||||  |||    |||||||||||||||||||| |||||||||    
T  24556806 tcaatttgaataatcacttaataagtcaatttgaaaaactatttcatttaaagaatcacaacaattatttcttttt 24556881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 193
Target Start/End: Complemental strand, 30004970 - 30004928
Alignment:
Q  151 caatttgtataatcacttaatcaatcaatttaaaaagttattt 193  Q
    ||||||||||||||||||||||||| ||||| ||||| |||||    
T  30004970 caatttgtataatcacttaatcaattaatttgaaaagctattt 30004928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 181
Target Start/End: Complemental strand, 28885733 - 28885704
Alignment:
Q  152 aatttgtataatcacttaatcaatcaattt 181  Q
    ||||||||||||||||||||||||||||||    
T  28885733 aatttgtataatcacttaatcaatcaattt 28885704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 284
Target Start/End: Original strand, 48660258 - 48660314
Alignment:
Q  227 aattgtgtttttattttattagaggcctatttctattatgagagtcgagccttcaatt 284  Q
    |||| ||||||||||||||||| ||||||||| || |||||||| ||||||| |||||    
T  48660258 aattatgtttttattttattaggggcctattttta-tatgagagccgagcctccaatt 48660314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 210
Target Start/End: Original strand, 50552497 - 50552559
Alignment:
Q  152 aatttgtataatcacttaatcaatcaatttaaaaagttatttta----aagaatcacaacaat 210  Q
    |||||||||||||||||||||  ||||||| ||||||||||| |    |||||||||||||||    
T  50552497 aatttgtataatcacttaatcggtcaatttgaaaagttatttcattgaaagaatcacaacaat 50552559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 181
Target Start/End: Original strand, 52055499 - 52055583
Alignment:
Q  99 tttagactctagttctcttttttggacaaaagtttaatgttatcaagccattc--aatttgtataatcacttaatcaatcaattt 181  Q
    ||||||||||||||||| |||||| ||| || | ||||  |||||| | || |  ||||| ||||||||||||||||||||||||    
T  52055499 tttagactctagttctcctttttgtacataaatctaatcatatcaaactatccataatttatataatcacttaatcaatcaattt 52055583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 44836785 - 44836749
Alignment:
Q  150 tcaatttgtataatcacttaatcaatcaatttaaaaa 186  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  44836785 tcaatttgtataatcacttaatcagtcaatttgaaaa 44836749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 186
Target Start/End: Original strand, 50371134 - 50371170
Alignment:
Q  150 tcaatttgtataatcacttaatcaatcaatttaaaaa 186  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  50371134 tcaatttgtataatcacttaatcagtcaatttgaaaa 50371170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0482 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 68 - 163
Target Start/End: Complemental strand, 1782 - 1687
Alignment:
Q  68 taaccaccaccaatccaacatacatctatcctttagactctagttctcttttttggacaaaagtttaatgttatcaagccattcaatttgtataat 163  Q
    ||||||||||||||||||||||||||||||||||| | | |||||||| ||| ||||||||| ||| ||  |||||| |||| |||||||||||||    
T  1782 taaccaccaccaatccaacatacatctatcctttatattgtagttctcctttgtggacaaaaattttattctatcaaaccatccaatttgtataat 1687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0482; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 222
Target Start/End: Complemental strand, 1668 - 1599
Alignment:
Q  153 atttgtataatcacttaatcaatcaatttaaaaagttattttaaagaatcacaacaattctttctttttt 222  Q
    ||||||||||||||||| | ||| |||||||||| |||||| |||||||||||| ||| |||| ||||||    
T  1668 atttgtataatcacttagtgaattaatttaaaaaattatttcaaagaatcacaataatcctttgtttttt 1599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 134 - 290
Target Start/End: Original strand, 41305688 - 41305838
Alignment:
Q  134 aatgttatcaagccattcaatttgtataatcacttaatcaatcaatttaaaaagttattttaaagaatcacaacaattctttcttttttacagaattgtg 233  Q
    |||| ||||||  ||| |||||||||||||||    ||||||||||||| ||| |||||| |||||||||||  |||  |||||||||  || ||||||     
T  41305688 aatgctatcaaatcatccaatttgtataatca----atcaatcaatttagaaaattatttcaaagaatcacagtaatattttctttttcgcataattgt- 41305782  T
Q  234 tttttattttattagaggcctatttctattatgagagtcgagccttcaattttatag 290  Q
    |||||||||||||| || || |||| ||||||||||||||||||| |||||||||||    
T  41305783 tttttattttatta-agaccaatttttattatgagagtcgagcctccaattttatag 41305838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 101 - 221
Target Start/End: Complemental strand, 43154903 - 43154777
Alignment:
Q  101 tagactctagttctcttttttggacaaaagtttaatgttatcaagccat--tcaatttgtataatcacttaatcaatcaatttaaaaagttat----ttt 194  Q
    |||| |||||||||  |||||||||| || ||| ||| |||||| |||   |||||||||||||||||||||||| |||||||||||||||||    ||     
T  43154903 tagattctagttctactttttggacataaatttgatgctatcaaaccaccatcaatttgtataatcacttaatcagtcaatttaaaaagttatttcatta 43154804  T
Q  195 aaagaatcacaacaattctttcttttt 221  Q
    ||||||||||||||||| ||| |||||    
T  43154803 aaagaatcacaacaattatttattttt 43154777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 221
Target Start/End: Complemental strand, 35654044 - 35653969
Alignment:
Q  150 tcaatttgtataatcacttaatcaatcaatttaaaaagttat----tttaaagaatcacaacaattctttcttttt 221  Q
    |||||||||||||||||||||||||||||||| ||||| |||    || ||||||||||||||||| |||||||||    
T  35654044 tcaatttgtataatcacttaatcaatcaatttgaaaagctatttcattgaaagaatcacaacaattatttcttttt 35653969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 101 - 221
Target Start/End: Complemental strand, 21791662 - 21791536
Alignment:
Q  101 tagactctagttctcttttttggacaaaagtttaatgttatcaagcca--ttcaatttgtataatcacttaatcaatcaatttaaaaagttat----ttt 194  Q
    ||||||||||||||| ||| || ||| || ||| |||  ||||| |||  |||||| |||||||||||||||||| ||||||| |||||||||    ||     
T  21791662 tagactctagttctcctttctgaacataaatttgatgccatcaaaccaccttcaatgtgtataatcacttaatcagtcaatttgaaaagttatttcattg 21791563  T
Q  195 aaagaatcacaacaattctttcttttt 221  Q
    ||||||||||||||||  |||||||||    
T  21791562 aaagaatcacaacaatcatttcttttt 21791536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 222
Target Start/End: Original strand, 22423633 - 22423760
Alignment:
Q  101 tagactctagttctcttttttggacaaaagtttaatgttatcaagccat--tcaatttgtataatcacttaatcaatcaatttaaaaagttatttt---- 194  Q
    ||||||||||||||  ||| |||||| || ||| ||| |||||| |||   ||||||||||| |||||||||||||||||||| ||||  ||||||        
T  22423633 tagactctagttctactttctggacataaatttgatgctatcaaaccaccatcaatttgtatgatcacttaatcaatcaatttgaaaaactattttattg 22423732  T
Q  195 aaagaatcacaacaattctttctttttt 222  Q
    ||||||||| ||||||| ||| ||||||    
T  22423733 aaagaatcaaaacaattatttatttttt 22423760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 45172707 - 45172634
Alignment:
Q  152 aatttgtataatcacttaatcaatcaatttaaaaagttattt----taaagaatcacaacaattctttcttttt 221  Q
    |||||||||||||||||||||| ||||||| ||||| |||||     ||||||||||||||||  |||||||||    
T  45172707 aatttgtataatcacttaatcagtcaatttgaaaagctatttcatggaaagaatcacaacaatcatttcttttt 45172634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 150 - 193
Target Start/End: Complemental strand, 10575587 - 10575544
Alignment:
Q  150 tcaatttgtataatcacttaatcaatcaatttaaaaagttattt 193  Q
    |||| ||||||||||||||||||| |||||||| ||||||||||    
T  10575587 tcaacttgtataatcacttaatcagtcaatttagaaagttattt 10575544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 193
Target Start/End: Complemental strand, 28463650 - 28463609
Alignment:
Q  152 aatttgtataatcacttaatcaatcaatttaaaaagttattt 193  Q
    ||||||||||||||||||||||||||| || ||||| |||||    
T  28463650 aatttgtataatcacttaatcaatcaagttgaaaagctattt 28463609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 291
Target Start/End: Complemental strand, 16061450 - 16061386
Alignment:
Q  227 aattgtgtttttattttattagaggcctatttctattatgagagtcgagccttcaattttatagg 291  Q
    |||||||  ||| ||||||||||||||||||| || || ||||| ||||||| || |||||||||    
T  16061450 aattgtgcgttttttttattagaggcctatttttactacgagagccgagcctccagttttatagg 16061386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 193
Target Start/End: Original strand, 16712 - 16753
Alignment:
Q  152 aatttgtataatcacttaatcaatcaatttaaaaagttattt 193  Q
    |||||||||||||||||||||| ||||||| ||||| |||||    
T  16712 aatttgtataatcacttaatcagtcaatttgaaaagctattt 16753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University