View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13411_high_8 (Length: 318)
Name: NF13411_high_8
Description: NF13411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13411_high_8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 36 - 318
Target Start/End: Complemental strand, 35685329 - 35685047
Alignment:
| Q |
36 |
tgcacatactataaatcatcataaaaattgcaactctctctgtcaagaagcaccagcaggacaaaaaggaaaatcattccaagaggggggaccatatatt |
135 |
Q |
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| T |
35685329 |
tgcacatactataaatcatcataaaaattgcaactctctctgtcaagaagcaccagcaggacaaaaaggaaaatcattccaagaggggggaccatatatt |
35685230 |
T |
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| Q |
136 |
aataccattatgtgcacattagacaaaaatctagatccaaatttcttataccgcgtcatgcaaaacaagccaacttacattaggatgcaatctgcacact |
235 |
Q |
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| T |
35685229 |
aataccattatgtgcacattagacaaaaatctagatccaaatttcttataccgcgtcatgcaaaacaagccaacttacattaggatgcaatctgcacact |
35685130 |
T |
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| Q |
236 |
tctggaatgacttcaacaagcaagtcggctcctttacggtaaaccaatcgactgataacaacaataacaatttcggatctact |
318 |
Q |
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| T |
35685129 |
tctggaatgacttcaacaagcaagtcggctcctttacggtaaaccaatcgactgataacaacaataacaatttcggatctact |
35685047 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 306
Target Start/End: Original strand, 40672031 - 40672095
Alignment:
| Q |
242 |
atgacttcaacaagcaagtcggctcctttacggtaaaccaatcgactgataacaacaataacaat |
306 |
Q |
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| T |
40672031 |
atgacttcgacaagcaaatctactcccttccgataaaccaatcggctgataacaacaataacaat |
40672095 |
T |
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