View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13411_low_11 (Length: 281)
Name: NF13411_low_11
Description: NF13411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13411_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 6 - 248
Target Start/End: Complemental strand, 44860418 - 44860176
Alignment:
| Q |
6 |
aggagcagagaaaggcatgccaagagatgtactgtgttcacattaatattctcacctttgaagttgaatgcttgtaaaactggaatgaagtgacaaattc |
105 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44860418 |
aggaacagagaaaggcatgccaagagatgtactgtgttcacattattattctcacctttgaagttgaatgcttgtaaaactggaatgaagtgacaaattc |
44860319 |
T |
|
| Q |
106 |
agccacttgaaagnnnnnnncgacgtcagctttttgaactgcaggatgttccttttcaatatcttcacggacggatcgcatcaaaactgatacagattta |
205 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44860318 |
agccacttgaaagaaaaaaacgacgtcagttttttgaactgcaggatgttccttttcaatatcttcacggacggatcgcatcaaaactgatacagattta |
44860219 |
T |
|
| Q |
206 |
agtatcaatgagattacttttacctttattataataggaaacc |
248 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
44860218 |
agtatcaatgagattacttgtacctttattataataggaaacc |
44860176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University