View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13411_low_13 (Length: 253)

Name: NF13411_low_13
Description: NF13411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13411_low_13
NF13411_low_13
[»] chr1 (1 HSPs)
chr1 (14-237)||(1018570-1018793)
[»] chr3 (2 HSPs)
chr3 (157-227)||(28775545-28775615)
chr3 (160-200)||(24259761-24259801)
[»] chr5 (5 HSPs)
chr5 (157-210)||(8279571-8279624)
chr5 (157-204)||(8279439-8279487)
chr5 (157-219)||(19117301-19117363)
chr5 (160-229)||(41018198-41018267)
chr5 (157-201)||(9477574-9477618)
[»] chr2 (2 HSPs)
chr2 (163-199)||(6735421-6735457)
chr2 (157-193)||(30809868-30809904)
[»] chr7 (5 HSPs)
chr7 (158-225)||(34423428-34423495)
chr7 (157-206)||(16706160-16706209)
chr7 (157-206)||(17248102-17248151)
chr7 (157-206)||(17680396-17680445)
chr7 (157-213)||(33723544-33723600)
[»] scaffold0025 (1 HSPs)
scaffold0025 (157-210)||(48031-48084)
[»] chr4 (2 HSPs)
chr4 (157-202)||(5139463-5139508)
chr4 (175-223)||(2742133-2742181)


Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 237
Target Start/End: Complemental strand, 1018793 - 1018570
Alignment:
Q  14 aaatccaactaaataacaataatctaattccctatttagtgacccccatttcaaagtagtaaaagtccacataaattgagtaaaatatgtaattcaacta 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1018793 aaatccaactaaataacaataatctaattccctatttagtgacccccatttcaaagtagtaaaagtccacataaattgagtaaaatatgtaattcaacta 1018694  T
Q  114 aatctcaccatataattgagttaaattcatataattcaactacgagtttaatttatatacactgtcagtgtacaaatgttttacacatgcatccaataat 213  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1018693 aatctcaccatataattgagttaaattcatataattcaactgcaagtttaatttatatacactgtcagtgtacaaatgttttacacatgcatccaataat 1018594  T
Q  214 gggttgccatatcaatgaattaaa 237  Q
    ||||||||| ||||| ||||||||    
T  1018593 gggttgccacatcaacgaattaaa 1018570  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 157 - 227
Target Start/End: Complemental strand, 28775615 - 28775545
Alignment:
Q  157 gagtttaatttatatacactgtcagtgtacaaatgttttacacatgcatccaataatgggttgccatatca 227  Q
    ||||||||||||||||||   | |||||||||| |||||||||||||||||||||||| ||||||| ||||    
T  28775615 gagtttaatttatatacatctttagtgtacaaaagttttacacatgcatccaataatgcgttgccaaatca 28775545  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 24259761 - 24259801
Alignment:
Q  160 tttaatttatatacactgtcagtgtacaaatgttttacaca 200  Q
    |||||||| |||||||||||||| || ||||||||||||||    
T  24259761 tttaatttgtatacactgtcagtttaaaaatgttttacaca 24259801  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 8279624 - 8279571
Alignment:
Q  157 gagtttaatttatatacactgtcagtgtacaaatgttttacacatgcatccaat 210  Q
    |||||||||| |||||||||||  ||||| ||| ||||||||||||||||||||    
T  8279624 gagtttaattcatatacactgttggtgtaaaaaagttttacacatgcatccaat 8279571  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 204
Target Start/End: Original strand, 8279439 - 8279487
Alignment:
Q  157 gagtttaattt-atatacactgtcagtgtacaaatgttttacacatgca 204  Q
    ||||||||||| ||||||||||||| ||||||||| |||||||||||||    
T  8279439 gagtttaattttatatacactgtcaatgtacaaattttttacacatgca 8279487  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 219
Target Start/End: Complemental strand, 19117363 - 19117301
Alignment:
Q  157 gagtttaatttatatacactgtcagtgtacaaatgttttacacatgcatccaataatgggttg 219  Q
    |||||||||| |||||   ||||| ||||||| | ||||||||||||||||||||||| ||||    
T  19117363 gagtttaattaatatattatgtcaatgtacaattattttacacatgcatccaataatgtgttg 19117301  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 41018198 - 41018267
Alignment:
Q  160 tttaatttatatacactgtcagtgtacaaatgttttacacatgcatccaataatgggttgccatatcaat 229  Q
    ||||||| ||||||  |||||||||||||  ||||||||||||||| |||| |||  |||||| ||||||    
T  41018198 tttaattaatatactttgtcagtgtacaatagttttacacatgcattcaatgatgttttgccacatcaat 41018267  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 9477574 - 9477618
Alignment:
Q  157 gagtttaatttatatacactgtcagtgtacaaatgttttacacat 201  Q
    |||||||||||||||||| ||||| |||||||| |||||| ||||    
T  9477574 gagtttaatttatatacattgtcaatgtacaaaagttttatacat 9477618  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 6735457 - 6735421
Alignment:
Q  163 aatttatatacactgtcagtgtacaaatgttttacac 199  Q
    ||||||||| |||||||||||||||||||||||||||    
T  6735457 aatttatatgcactgtcagtgtacaaatgttttacac 6735421  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 193
Target Start/End: Complemental strand, 30809904 - 30809868
Alignment:
Q  157 gagtttaatttatatacactgtcagtgtacaaatgtt 193  Q
    |||||||||||||||||| ||||||||||||||||||    
T  30809904 gagtttaatttatatacattgtcagtgtacaaatgtt 30809868  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 225
Target Start/End: Original strand, 34423428 - 34423495
Alignment:
Q  158 agtttaatttatatacactgtcagtgtacaaatgttttacacatgcatccaataatgggttgccatat 225  Q
    |||||||||||||||||   ||| |||| ||| |||||||||||||||| ||| ||| ||||||||||    
T  34423428 agtttaatttatatacataatcaatgtataaaagttttacacatgcatctaatgatgtgttgccatat 34423495  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 206
Target Start/End: Original strand, 16706160 - 16706209
Alignment:
Q  157 gagtttaatttatatacactgtcagtgtacaaatgttttacacatgcatc 206  Q
    |||||||||||||||||||||| |||||| | | | ||||||||||||||    
T  16706160 gagtttaatttatatacactgttagtgtatacaagctttacacatgcatc 16706209  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 206
Target Start/End: Complemental strand, 17248151 - 17248102
Alignment:
Q  157 gagtttaatttatatacactgtcagtgtacaaatgttttacacatgcatc 206  Q
    ||||||||||||||||||||||||||| | | | |||||||||| |||||    
T  17248151 gagtttaatttatatacactgtcagtgcaaacaagttttacacaagcatc 17248102  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 206
Target Start/End: Original strand, 17680396 - 17680445
Alignment:
Q  157 gagtttaatttatatacactgtcagtgtacaaatgttttacacatgcatc 206  Q
    |||||||||||||||||||||| |||||| | | | ||||||||||||||    
T  17680396 gagtttaatttatatacactgttagtgtatacaagctttacacatgcatc 17680445  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 213
Target Start/End: Complemental strand, 33723600 - 33723544
Alignment:
Q  157 gagtttaatttatatacactgtcagtgtacaaatgttttacacatgcatccaataat 213  Q
    ||||||||||||||||||| |||||||||  ||  | ||| ||||||||||||||||    
T  33723600 gagtttaatttatatacaccgtcagtgtatgaaaatgttatacatgcatccaataat 33723544  T

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Target: scaffold0025 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 48031 - 48084
Alignment:
Q  157 gagtttaatttatatacactgtcagtgtacaaatgttttacacatgcatccaat 210  Q
    ||||||||||| ||||||| | ||||||| ||| ||| ||||||||||||||||    
T  48031 gagtttaatttgtatacaccgccagtgtagaaaagttatacacatgcatccaat 48084  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 202
Target Start/End: Original strand, 5139463 - 5139508
Alignment:
Q  157 gagtttaatttatatacactgtcagtgtacaaatgttttacacatg 202  Q
    |||||||||||||||||| |||||||||||| |  |||||||||||    
T  5139463 gagtttaatttatatacaatgtcagtgtacacaacttttacacatg 5139508  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 2742133 - 2742181
Alignment:
Q  175 ctgtcagtgtacaaatgttttacacatgcatccaataatgggttgccat 223  Q
    |||||||||||||| | |||||||||| |||||||| ||| ||||||||    
T  2742133 ctgtcagtgtacaattattttacacatacatccaatgatgtgttgccat 2742181  T

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