View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13411_low_16 (Length: 224)
Name: NF13411_low_16
Description: NF13411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13411_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 20 - 216
Target Start/End: Original strand, 40853829 - 40854026
Alignment:
| Q |
20 |
tagcatcatagagattagaagaaatgggcttgtgaaattgcataagcaaaatagtgcacaatgtttaataaaacatacaagtttcaatcccttcacacac |
119 |
Q |
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| T |
40853829 |
tagcatcatagagattagaagaaatgggcttgtgaaattgcataagcaaaatagtgcacaatgtttaataaaacatacaagtttcaatcccttcacacac |
40853928 |
T |
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| Q |
120 |
acgtacaaaaatttacttcaaatagcaaggaaaggtgatctataataaaatggtgaatattgaagaagc-aaacaattacctgtatctgtgctcctcc |
216 |
Q |
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| T |
40853929 |
acgtacaaaaatttacttcaaatagcaaggaaaggtgatctataataaaatggtgaatattgaagaagcaaaacaattacctgtatctgtgatcctcc |
40854026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 29 - 188
Target Start/End: Original strand, 40858247 - 40858402
Alignment:
| Q |
29 |
agagattagaagaaatgggcttgtgaaattgcataagcaaaatagtgcacaatgtttaataaaacatacaagtttcaatcccttcacacacacgtacaaa |
128 |
Q |
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|||||||| ||||||| ||| ||||||||||||| |||| |||| |||||||||||||| |||||||||||||||||||||| ||||||| | ||| |
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| T |
40858247 |
agagattataagaaataggcatgtgaaattgcatgagcataatactgcacaatgtttaacaaaacatacaagtttcaatcccgtcacaca----ttaaaa |
40858342 |
T |
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| Q |
129 |
aatttacttcaaatagcaaggaaaggtgatctataataaaatggtgaatattgaagaagc |
188 |
Q |
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| T |
40858343 |
aatttactccaaatagcaaggacaggtgatctataataacatggtgaatattgtagaagc |
40858402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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