View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13411_low_7 (Length: 335)

Name: NF13411_low_7
Description: NF13411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13411_low_7
NF13411_low_7
[»] chr6 (3 HSPs)
chr6 (113-301)||(29201195-29201385)
chr6 (20-79)||(29201386-29201445)
chr6 (20-69)||(29200721-29200770)
[»] chr5 (4 HSPs)
chr5 (20-135)||(17219684-17219799)
chr5 (42-171)||(8095278-8095407)
chr5 (57-92)||(2313006-2313041)
chr5 (20-72)||(17219056-17219108)
[»] chr2 (2 HSPs)
chr2 (29-191)||(24399300-24399469)
chr2 (57-92)||(35112889-35112924)
[»] chr4 (6 HSPs)
chr4 (25-97)||(32648358-32648430)
chr4 (25-72)||(32647706-32647753)
chr4 (57-92)||(26341504-26341539)
chr4 (30-91)||(30057147-30057207)
chr4 (30-91)||(30057816-30057876)
chr4 (27-91)||(1995474-1995538)
[»] chr1 (2 HSPs)
chr1 (27-91)||(45517949-45518013)
chr1 (20-88)||(26779706-26779774)
[»] chr7 (2 HSPs)
chr7 (57-92)||(37034861-37034896)
chr7 (57-93)||(40459698-40459734)


Alignment Details
Target: chr6 (Bit Score: 152; Significance: 2e-80; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 113 - 301
Target Start/End: Complemental strand, 29201385 - 29201195
Alignment:
Q  113 tgtgtccattatcactctatccatcagttctgcacaaccacgtttcatcttctactatccattctcaccttctttctcccatctacggtaccctttcaac 212  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  29201385 tgtgtccattatcactctatccatcagttctgcacacccacatttcatcttctactatccattctcaccttctttctcccatctatggcaccctttcaac 29201286  T
Q  213 tttcagattaaaaacacatgccttcgatttaaattttaaccacaccatcatt--aacagtactgaagaaattggatggccatggaagaagt 301  Q
    ||| |||||||||||||||||||| ||||||| |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  29201285 tttaagattaaaaacacatgcctttgatttaagttttaaccacaccatcattgaaacagtactgaagaaattggatggccatggaagaagt 29201195  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 29201445 - 29201386
Alignment:
Q  20 atgaatattttatgtgagaacggtaagaatgaataggagccatcagattaaaaatagatg 79  Q
    |||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||    
T  29201445 atgaatattttatgtgagaatgctaagaatgaataggagccatcaaattaaaaatagatg 29201386  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 29200721 - 29200770
Alignment:
Q  20 atgaatattttatgtgagaacggtaagaatgaataggagccatcagatta 69  Q
    |||| ||||||||||||||| |||| ||||||||||||||| ||| ||||    
T  29200721 atgagtattttatgtgagaatggtaggaatgaataggagccgtcaaatta 29200770  T

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Target: chr5 (Bit Score: 84; Significance: 7e-40; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 20 - 135
Target Start/End: Complemental strand, 17219799 - 17219684
Alignment:
Q  20 atgaatattttatgtgagaacggtaagaatgaataggagccatcagattaaaaatagatggttgagattaaatgactccaattaaacaccacatgtgtcc 119  Q
    |||| ||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  17219799 atgagtattttatgtgagaatggtaggaatgaataggagccatcagattaaaaatatatggttgagattaaatgagtccaattaaacaccacatgtgtcc 17219700  T
Q  120 attatcactctatcca 135  Q
    |  | |||||||||||    
T  17219699 acaaccactctatcca 17219684  T

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Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 42 - 171
Target Start/End: Original strand, 8095278 - 8095407
Alignment:
Q  42 gtaagaatgaataggagccatcagattaaaaatagatggttgagattaaatgactccaattaaacaccacatgtgtccattatcactctatccatcagtt 141  Q
    ||||||||||||   | |||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||  | |||||||||||||| ||    
T  8095278 gtaagaatgaattacaaccatcagattaaaaatagatggttgagattaaatgagtccttttaaacaccacatgtgtccacaaccactctatccatcaatt 8095377  T
Q  142 ctgcacaaccacgtttcatcttctactatc 171  Q
    ||||||| ||||||||||||||||||||||    
T  8095378 ctgcacacccacgtttcatcttctactatc 8095407  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 92
Target Start/End: Original strand, 2313006 - 2313041
Alignment:
Q  57 agccatcagattaaaaatagatggttgagattaaat 92  Q
    |||||| |||||||||||||||||||||||||||||    
T  2313006 agccattagattaaaaatagatggttgagattaaat 2313041  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 17219056 - 17219108
Alignment:
Q  20 atgaatattttatgtgagaacggtaagaatgaataggagccatcagattaaaa 72  Q
    |||| ||||||||||||||| |||| ||||||||  ||||||| |||||||||    
T  17219056 atgagtattttatgtgagaatggtaggaatgaatttgagccattagattaaaa 17219108  T

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Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 29 - 191
Target Start/End: Complemental strand, 24399469 - 24399300
Alignment:
Q  29 ttatgtgagaacggtaagaatgaataggagccatcagattaaaaatagatggttgagattaaatgactccaattaaacaccacatgtgtccattatcact 128  Q
    ||||||||||| |||||||||||||   ||||||| ||||||||||| |||||||||||||||||| |||| ||||||||||||||| ||||  | ||||    
T  24399469 ttatgtgagaatggtaagaatgaattacagccatcggattaaaaataaatggttgagattaaatgagtccatttaaacaccacatgtatccacaaccact 24399370  T
Q  129 ctatcc-------atcagttctgcacaaccacgtttcatcttctactatccattctcaccttctttctcc 191  Q
    ||||||       |||| ||||||||| ||||| |||||||||||||||||||| |||| ||||||||||    
T  24399369 ctatccatcaaatatcaattctgcacacccacgcttcatcttctactatccattgtcacgttctttctcc 24399300  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 92
Target Start/End: Original strand, 35112889 - 35112924
Alignment:
Q  57 agccatcagattaaaaatagatggttgagattaaat 92  Q
    |||||| |||||||||||||||||||||||||||||    
T  35112889 agccattagattaaaaatagatggttgagattaaat 35112924  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 32648430 - 32648358
Alignment:
Q  25 tattttatgtgagaacggtaagaatgaataggagccatcagattaaaaatagatggttgagattaaatgactc 97  Q
    |||||||||||||||   || |||||||||||||||||||||||||||||||||||  ||||||||| |||||    
T  32648430 tattttatgtgagaataataggaatgaataggagccatcagattaaaaatagatggaagagattaaaagactc 32648358  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 32647706 - 32647753
Alignment:
Q  25 tattttatgtgagaacggtaagaatgaataggagccatcagattaaaa 72  Q
    ||||||||||||||| | || |||||||||||||||||||||||||||    
T  32647706 tattttatgtgagaatgataggaatgaataggagccatcagattaaaa 32647753  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 92
Target Start/End: Original strand, 26341504 - 26341539
Alignment:
Q  57 agccatcagattaaaaatagatggttgagattaaat 92  Q
    |||||| |||||||||||||||||||||||||||||    
T  26341504 agccattagattaaaaatagatggttgagattaaat 26341539  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 30057147 - 30057207
Alignment:
Q  30 tatgtgagaacggtaagaatgaataggagccatcagattaaaaatagatggttgagattaaa 91  Q
    |||||||||| | |||||||||||| ||||||| ||||| |||||| |||| ||||||||||    
T  30057147 tatgtgagaatgataagaatgaatatgagccattagatt-aaaatacatggctgagattaaa 30057207  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 30057876 - 30057816
Alignment:
Q  30 tatgtgagaacggtaagaatgaataggagccatcagattaaaaatagatggttgagattaaa 91  Q
    |||||||||| | ||||||| |||||||||||| ||||| |||||| |||| ||||||||||    
T  30057876 tatgtgagaatgataagaataaataggagccattagatt-aaaatacatggctgagattaaa 30057816  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 1995538 - 1995474
Alignment:
Q  27 ttttatgtgagaacggtaagaatgaataggagccatcagattaaaaatagatggttgagattaaa 91  Q
    |||||| |||||| | | |||||||||| ||||||||| ||||||||   |||||||||||||||    
T  1995538 ttttatatgagaatgatgagaatgaataagagccatcaaattaaaaaggaatggttgagattaaa 1995474  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 45518013 - 45517949
Alignment:
Q  27 ttttatgtgagaacggtaagaatgaataggagccatcagattaaaaatagatggttgagattaaa 91  Q
    |||||| |||||||| | |||||||||| ||||||||| |||||||| | |||||||||||||||    
T  45518013 ttttatatgagaacgatgagaatgaataagagccatcaaattaaaaagaaatggttgagattaaa 45517949  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 26779774 - 26779706
Alignment:
Q  20 atgaatattttatgtgagaacggtaagaatgaataggagccatcagattaaaaatagatggttgagatt 88  Q
    |||| ||||||||||||||| ||| ||||||| || || |||| |||| |||||| ||||| |||||||    
T  26779774 atgattattttatgtgagaatggtgagaatgattatgaaccattagatcaaaaatggatggctgagatt 26779706  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 92
Target Start/End: Original strand, 37034861 - 37034896
Alignment:
Q  57 agccatcagattaaaaatagatggttgagattaaat 92  Q
    |||||| |||||||||||||||||||||||||||||    
T  37034861 agccattagattaaaaatagatggttgagattaaat 37034896  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 93
Target Start/End: Original strand, 40459698 - 40459734
Alignment:
Q  57 agccatcagattaaaaatagatggttgagattaaatg 93  Q
    ||||||||||||||||| | |||||||||||||||||    
T  40459698 agccatcagattaaaaagaaatggttgagattaaatg 40459734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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