View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13413_high_4 (Length: 248)
Name: NF13413_high_4
Description: NF13413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13413_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 226
Target Start/End: Complemental strand, 7020827 - 7020617
Alignment:
| Q |
16 |
aagaatataacgtaagaaatagaaaactttaaaacagagagaaatcactacaattgtctaataaaaataagatgataatagtatgtgacaaattgtacaa |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7020827 |
aagaatataacgtaagaaatagaaaactttaaaacggagagaaatcactacaattgtctaataaaaataagatgataatagtatgtgacaaattgtacaa |
7020728 |
T |
|
| Q |
116 |
cacataaagttttgtttcatatgtgacgtgatttatcatgaaatttttgtttcagtttatattattcatcatgattttttgtttcatatatagtgctgat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7020727 |
cacataaagttttgtttcatatgtgacgtgatttatcatgaaatttttgtttcagtttatatgattcatcatgattttttgtttcatatatagtgctgat |
7020628 |
T |
|
| Q |
216 |
tgggaggtctc |
226 |
Q |
| |
|
||||||||||| |
|
|
| T |
7020627 |
tgggaggtctc |
7020617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University