View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13413_low_1 (Length: 481)
Name: NF13413_low_1
Description: NF13413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13413_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 9 - 463
Target Start/End: Complemental strand, 12683630 - 12683176
Alignment:
| Q |
9 |
tcatcatcgtcataatattcttcttcatctcgacgcggctgatcattctcagtctcagcttcctccatggtcacatccgccccggctgctggtggcacct |
108 |
Q |
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||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12683630 |
tcatcatcgtcataatattcttcttcatctcgatgcggccgatcattctcagtctcagcttcctccatggtcacatccgccccggctgctggtggcacct |
12683531 |
T |
|
| Q |
109 |
gttgctgtggaggccactgctgctccggctgaaccatcaacggtgccatcatcgttccctcaggcctcgacgcagcagcagctgcaccctccaccttgtt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12683530 |
gttgctgtggaggccactgctgctccggctgaaccatcaacggtgccatcatcgttccctcaggcctcgacgcagcagcagctgcaccctccaccttgtt |
12683431 |
T |
|
| Q |
209 |
cttctgcctgtatagagcatcaagttggtgaaagtaaggacatgtctttgaatcttctggcctcttcttgttgctttccttcactttcttgaaatacttg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12683430 |
cttctgcctgtatagagcatcaagttggtgaaagtaaggacatgtctttgaatcttctggcctcttcttgttgctttccttcactttcttgaaatacttg |
12683331 |
T |
|
| Q |
309 |
ttaatgttctcccatttctctttgcacctctttgcattcctattgtaccccattttcttcatcaaccctgaaatctcctcccataatggccctttaggtc |
408 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12683330 |
ttaatgttttcccatttctctttgcacctctttgcattcctattgtaccccattttcttcatcaaccctgaaatctcctcccataatggccctttaggtc |
12683231 |
T |
|
| Q |
409 |
cattctcttggtacttcatatcaagagttgttcttagctttatcaatgcctcaac |
463 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
12683230 |
cattctcttggtacttcatatcaagagttgttctcagctttatcaatgcctcaac |
12683176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 6e-35; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 237 - 424
Target Start/End: Original strand, 44553311 - 44553498
Alignment:
| Q |
237 |
tgaaagtaaggacatgtctttgaatcttctggcctcttcttgttgctttccttcactttcttgaaatacttgttaatgttctcccatttctctttgcacc |
336 |
Q |
| |
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||||| ||||||||||||||||||||||| || ||||| ||||| || || |||||||||||||| |||||||| || ||||||||||| |||||||||| |
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| T |
44553311 |
tgaaaataaggacatgtctttgaatcttcgggtctctttttgttactctctttcactttcttgaagtacttgtttatattctcccatttttctttgcacc |
44553410 |
T |
|
| Q |
337 |
tctttgcattcctattgtaccccattttcttcatcaaccctgaaatctcctcccataatggccctttaggtccattctcttggtactt |
424 |
Q |
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| ||||||||||||||||| || | |||||||| || ||||||||||||| || ||||| |||||||||||||||||||| |
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| T |
44553411 |
tttttgcattcctattgtaaccgaggttcttcattgctaaagatatctcctcccatagaggaccttttggtccattctcttggtactt |
44553498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 275 - 355
Target Start/End: Complemental strand, 44533734 - 44533654
Alignment:
| Q |
275 |
cttgttgctttccttcactttcttgaaatacttgttaatgttctcccatttctctttgcacctctttgcattcctattgta |
355 |
Q |
| |
|
|||||| |||||||||| ||||||| | || ||||| || ||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
44533734 |
cttgttactttccttcattttcttgtagtatttgttgatattctcccatttttctttgcacctttttgcattcctattgta |
44533654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 344
Target Start/End: Original strand, 36127420 - 36127466
Alignment:
| Q |
298 |
tgaaatacttgttaatgttctcccatttctctttgcacctctttgca |
344 |
Q |
| |
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||||||||||||| || |||||||| ||||||||||| ||||||||| |
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| T |
36127420 |
tgaaatacttgttgatattctcccacttctctttgcatctctttgca |
36127466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 155
Target Start/End: Original strand, 44553171 - 44553205
Alignment:
| Q |
121 |
gccactgctgctccggctgaaccatcaacggtgcc |
155 |
Q |
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|||| |||||||||||||||||||||||||||||| |
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| T |
44553171 |
gccattgctgctccggctgaaccatcaacggtgcc |
44553205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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