View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13413_low_2 (Length: 398)
Name: NF13413_low_2
Description: NF13413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13413_low_2 |
 | |
|
| [»] scaffold0766 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 24141845 - 24142231
Alignment:
| Q |
1 |
acccaataatcgttggcttccgtttcattaaagtgttgaaaacccaagcctgcaaagtaaacatcatttaagtatcagggtaaaaacatgaacatgcatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24141845 |
acccaataatcgttggcttccgtttcattaaagtgttgaaaatccaagcctgcaaagtaaacatcatttaagtatcagggtaaaaacatgaacatgcatg |
24141944 |
T |
|
| Q |
101 |
taaataaataagcaattcattattatttatacatgtaacaatgtcaagtattcagccagctgtgaagtcttataatgggctccattgttaagctccatgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24141945 |
taaataaataagcaattcattattatttatacatgtaacaatgtcaagtattcagccagctgtgaagtcttataatgggctccattgttaagctccatgt |
24142044 |
T |
|
| Q |
201 |
acatgtgagcaagggcagccactccccatgcgtaatcgaaaaccagatttaggcaccggaagtacttcaggtatgtcacgtccacatagttttcgctctt |
300 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
24142045 |
acaggtgagcaagggcagccactccccatgcgtaatcgaaaaccagctttaggcaccggaagtacttcaggtatgtaacgtccacatagttttcgctctt |
24142144 |
T |
|
| Q |
301 |
gagcttgacacccaccaaataaagtagatagatgcgaagagcgtaatcctatgtcacttgtatctcatcgacatcaccctctttctc |
387 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
24142145 |
gagcttgacgcccaccaaataaagtagatagatgcgaagagcgtaatcctgtgtcacttgtatcccatcgacatcaccctctttctc |
24142231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 97 - 218
Target Start/End: Complemental strand, 40975196 - 40975075
Alignment:
| Q |
97 |
catgtaaataaataagcaattcattattatttatacatgtaacaatgtcaagtattcagccagctgtgaagtcttataatgggctccattgttaagctcc |
196 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||| |||| |||||| |||||||| ||||||| || | || ||||||||||||||||| ||||||||| | |
|
|
| T |
40975196 |
catgtaaaaaaataggcaattcattattatttaaacatataacaaggtcaagtagtcagccaactataaaatcttataatgggctccactgttaagcttc |
40975097 |
T |
|
| Q |
197 |
atgtacatgtgagcaagggcag |
218 |
Q |
| |
|
| |||| || ||||||||||| |
|
|
| T |
40975096 |
ttatacaggtaagcaagggcag |
40975075 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 220
Target Start/End: Original strand, 39468595 - 39468705
Alignment:
| Q |
110 |
aagcaattcattattatttatacatgtaacaatgtcaagtattcagccagctgtgaagtcttataatgggctccattgttaagctccatgtacatgtgag |
209 |
Q |
| |
|
||||||| |||||||||||||| |||||||| ||||||||||| || || ||| |||| ||||||||| | ||| ||||| ||| | |||| ||||| |
|
|
| T |
39468595 |
aagcaatctattattatttatacctgtaacaaagtcaagtattctgcaagatgtttagtcatataatgggagctattattaagatccttttacaagtgag |
39468694 |
T |
|
| Q |
210 |
caagggcagcc |
220 |
Q |
| |
|
||||||||| |
|
|
| T |
39468695 |
ttagggcagcc |
39468705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 97 - 301
Target Start/End: Complemental strand, 18418583 - 18418379
Alignment:
| Q |
97 |
catgtaaataaataagcaattcattattatttatacatgtaacaatgtcaagtattcagccagctgtgaagtcttataatgggctccattgttaagctcc |
196 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| || |||| ||||||||| |||||| || ||||||||||||||||||||||||| ||||| |
|
|
| T |
18418583 |
catgtaaataaataagcaattcattattttttatacctgcgacaaggtcaagtatccagccaatcgtaaagtcttataatgggctccattgttgagctct |
18418484 |
T |
|
| Q |
197 |
atgtacatgtgagcaagggcagccactccccatgcgtaatcgaaaaccagatttaggcaccggaagtacttcaggtatgtcacgtccacatagttttcgc |
296 |
Q |
| |
|
| |||| ||||||||||||||| |||||||| |||||||| ||||||||| | | | ||||||| ||| ||||||||| || || ||||| |||| |
|
|
| T |
18418483 |
ctatacaggtgagcaagggcagctgctccccattcgtaatcgtaaaccagatccatgtcacagaagtacctcatgtatgtcacatctacttagttgtcgc |
18418384 |
T |
|
| Q |
297 |
tcttg |
301 |
Q |
| |
|
||||| |
|
|
| T |
18418383 |
tcttg |
18418379 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 26 - 140
Target Start/End: Complemental strand, 20626432 - 20626317
Alignment:
| Q |
26 |
cattaaagtgttgaaaacccaagcctgcaaagtaaacatcatttaagtatcagggtaa-aaacatgaacatgcatgtaaataaataagcaattcattatt |
124 |
Q |
| |
|
|||||||| |||||||| ||||||||| ||||| |||| | | ||||||| || ||| ||||||||| || |||||||||||||| ||||||||||||| |
|
|
| T |
20626432 |
cattaaagggttgaaaaaccaagcctggaaagtcaacaacctataagtattagtataagaaacatgaatatacatgtaaataaatatgcaattcattatt |
20626333 |
T |
|
| Q |
125 |
atttatacatgtaaca |
140 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
20626332 |
atttatacttgtaaca |
20626317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 97 - 301
Target Start/End: Complemental strand, 16363707 - 16363499
Alignment:
| Q |
97 |
catgtaaataaataagcaattcattattatttatacatgtaacaatgtcaagtat-tcagccagctgtgaagtcttataatgggctccattgttaagctc |
195 |
Q |
| |
|
|||||||||||| |||||| ||||||| || ||||| ||||||| ||| ||| | | ||| |||||| |||||||||||| |||||||||| |||||| |
|
|
| T |
16363707 |
catgtaaataaacaagcaactcattataatgtatactcgtaacaaggtcgagtgtgttagctagctgtaaagtcttataatttgctccattgtcaagctc |
16363608 |
T |
|
| Q |
196 |
catgtacatgtgagca---agggcagccactccccatgcgtaatcgaaaaccagatttaggcaccggaagtacttcaggtatgtcacgtccacatagttt |
292 |
Q |
| |
|
| | ||||||||| || |||| |||| || ||||||| |||||| |||||| | ||| || |||||||||||| ||| ||||||||||||||| |
|
|
| T |
16363607 |
cctatacatgtgatcagtgagggtagccgcttcccatgcctaatcggaaaccaactctagatgcctttagtacttcaggtctgttacgtccacatagttt |
16363508 |
T |
|
| Q |
293 |
tcgctcttg |
301 |
Q |
| |
|
|||||||| |
|
|
| T |
16363507 |
acgctcttg |
16363499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 5412388 - 5412331
Alignment:
| Q |
181 |
tccattgttaagctccatgtacatgtgagcaagggcagccactccccatgcgtaatcg |
238 |
Q |
| |
|
|||||||||||||||| | |||| ||||||||||| ||| ||||||||||| |||||| |
|
|
| T |
5412388 |
tccattgttaagctccttatacaagtgagcaagggaagctactccccatgcataatcg |
5412331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 294
Target Start/End: Complemental strand, 20626266 - 20626160
Alignment:
| Q |
188 |
ttaagctccatgtacatgtgagcaagggcagccactccccatgcgtaatcgaaaaccagatttaggcaccggaagtacttcaggtatgtcacgtccacat |
287 |
Q |
| |
|
||||||||| ||||||||||||||||| || | || ||||||| | ||| ||||||||| ||| |||||||||||| | ||||||| ||||||| |
|
|
| T |
20626266 |
ttaagctccttgtacatgtgagcaaggtcaactgcttcccatgcatgatcagaaaccagatccaggtcccggaagtacttgaagtatgtccgatccacat |
20626167 |
T |
|
| Q |
288 |
agttttc |
294 |
Q |
| |
|
||||||| |
|
|
| T |
20626166 |
agttttc |
20626160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 97 - 234
Target Start/End: Original strand, 9403168 - 9403303
Alignment:
| Q |
97 |
catgtaaataaataagcaattcattattatttatacatgtaacaatgtcaagtattcagccagctgtgaagtcttataatgggctccattgttaagctcc |
196 |
Q |
| |
|
|||||||||||||| |||||||||| || ||||||||||||| || |||||| |||||||| |||||||||||||||||||||||| ||| | |||||| |
|
|
| T |
9403168 |
catgtaaataaata-gcaattcattgttgtttatacatgtaagaagctcaagttttcagccaactgtgaagtcttataatgggctcc-ttgcttagctcc |
9403265 |
T |
|
| Q |
197 |
atgtacatgtgagcaagggcagccactccccatgcgta |
234 |
Q |
| |
|
| |||||||||||||||| || || ||||||| |||| |
|
|
| T |
9403266 |
ttatacatgtgagcaagggaagtcattccccatacgta |
9403303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 84 - 196
Target Start/End: Complemental strand, 4578537 - 4578425
Alignment:
| Q |
84 |
aaacatgaacatgcatgtaaataaataagcaattcattattatttatacatgtaacaatgtcaagtattcagccagctgtgaagtcttataatgggctcc |
183 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||||||||| | ||| || | |||||||| |||| ||| ||||| |||||||||| | |
|
|
| T |
4578537 |
aaacatgaacatcgatgtaaataaataagcaattaattattatttatacctttaaaaagttaaagtattcgaccaggtgtttagtctaataatgggctgc |
4578438 |
T |
|
| Q |
184 |
attgttaagctcc |
196 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
4578437 |
gtttttaagctcc |
4578425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 83 - 151
Target Start/End: Original strand, 19984394 - 19984462
Alignment:
| Q |
83 |
aaaacatgaacatgcatgtaaataaataagcaattcattattatttatacatgtaacaatgtcaagtat |
151 |
Q |
| |
|
|||||||||||||| | || |||||| ||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
19984394 |
aaaacatgaacatgtaggttaataaacaagcaatcaattattatttatacatgtaacaaagtcaagtat |
19984462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 97 - 151
Target Start/End: Complemental strand, 21118761 - 21118707
Alignment:
| Q |
97 |
catgtaaataaataagcaattcattattatttatacatgtaacaatgtcaagtat |
151 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||| |||||||| ||||||||| |
|
|
| T |
21118761 |
catgtaaataaataagcaaatcattattatgtatacttgtaacaaggtcaagtat |
21118707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 183 - 237
Target Start/End: Original strand, 33318997 - 33319051
Alignment:
| Q |
183 |
cattgttaagctccatgtacatgtgagcaagggcagccactccccatgcgtaatc |
237 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||| ||||||||||| ||||| |
|
|
| T |
33318997 |
cattgttaagctccatgtacaggtgtgcaagggcagcaactccccatgcataatc |
33319051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 97 - 291
Target Start/End: Complemental strand, 23219552 - 23219361
Alignment:
| Q |
97 |
catgtaaataaataagcaattcattattatttatacatgtaacaatgtcaagtattcagccagctgtgaagtctt-ataatgggctccattgttaagctc |
195 |
Q |
| |
|
|||||||||||||||| |||| |||||||| ||||||||||||| ||||||||| | |||| || |||| |||| |||||| |||| ||||||| |
|
|
| T |
23219552 |
catgtaaataaataag-aatt--ttattatt-atacatgtaacaaggtcaagtatacggccatctatgaactctttataatgacatccacaattaagctt |
23219457 |
T |
|
| Q |
196 |
catgtacatgtgagcaagggcagccactccccatgcgtaatcgaaaaccagatttaggcaccggaagtacttcaggtatgtcacgtccacatagtt |
291 |
Q |
| |
|
|||| | |||||||| ||||| | |||| ||||| |||||| | ||||| | ||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
23219456 |
tgtgtataagtgagcaacggcagtcgctcctcatgcataatcggagaccagctccaggtcacggaagtacttcaggtatgtcacgtcgacatagtt |
23219361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 97 - 212
Target Start/End: Original strand, 11152969 - 11153084
Alignment:
| Q |
97 |
catgtaaataaataagcaattcattattatttatacatgtaacaatgtcaagtattcagccagctgtgaagtcttataatgggctccattgttaagctcc |
196 |
Q |
| |
|
||||||||||||||||||| | ||||| ||||||| | |||||| || || ||| || ||| |||||||||| ||||| || ||||| | || |||||| |
|
|
| T |
11152969 |
catgtaaataaataagcaacttattatagtttatacctttaacaaggtgaactatccatccatctgtgaagtcatataacggtctccactattgagctcc |
11153068 |
T |
|
| Q |
197 |
atgtacatgtgagcaa |
212 |
Q |
| |
|
|||||| || ||||| |
|
|
| T |
11153069 |
ttgtacaggtaagcaa |
11153084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0766 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0766
Description:
Target: scaffold0766; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 301
Target Start/End: Complemental strand, 4031 - 3990
Alignment:
| Q |
260 |
aagtacttcaggtatgtcacgtccacatagttttcgctcttg |
301 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||| |||||||| |
|
|
| T |
4031 |
aagtacctcaggtatgtcacgtctacatagtttgcgctcttg |
3990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 25801787 - 25801848
Alignment:
| Q |
116 |
ttcattattatttatacatgtaacaatgtcaagtattcagccagctgtgaagtcttataatg |
177 |
Q |
| |
|
||||||||||||||||| | ||| || ||||||||| |||||| ||||||||||| ||||| |
|
|
| T |
25801787 |
ttcattattatttatacctataataaggtcaagtatgcagccaattgtgaagtcttgtaatg |
25801848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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