View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13413_low_3 (Length: 374)
Name: NF13413_low_3
Description: NF13413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13413_low_3 |
 | |
|
| [»] scaffold0074 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 295; Significance: 1e-166; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 21 - 356
Target Start/End: Original strand, 27878707 - 27879043
Alignment:
| Q |
21 |
actgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27878707 |
actgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa |
27878806 |
T |
|
| Q |
121 |
cctgacaaggggagaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattacc |
220 |
Q |
| |
|
| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27878807 |
caa-ataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattacc |
27878905 |
T |
|
| Q |
221 |
actctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttt--tctctatatttttcctctcactatt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
27878906 |
actctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctctctatt |
27879005 |
T |
|
| Q |
319 |
ctactaagaacaagtagttgttgtgttactttgttctg |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27879006 |
ctactaagaacaagtagttgttgtgttactttgttctg |
27879043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 23 - 317
Target Start/End: Complemental strand, 1235018 - 1234725
Alignment:
| Q |
23 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacc |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1235018 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
1234919 |
T |
|
| Q |
123 |
tgacaaggggagaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac |
222 |
Q |
| |
|
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1234918 |
a-ataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccac |
1234820 |
T |
|
| Q |
223 |
tctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttt--tctctatatttttcctctcactat |
317 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||| | ||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||| |
|
|
| T |
1234819 |
tctctcttataaataggagaatacta--actaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat |
1234725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 23 - 317
Target Start/End: Original strand, 26976131 - 26976424
Alignment:
| Q |
23 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacc |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26976131 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
26976230 |
T |
|
| Q |
123 |
tgacaaggggagaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac |
222 |
Q |
| |
|
| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26976231 |
a-ataaggggaaaaaaccaaggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac |
26976329 |
T |
|
| Q |
223 |
tctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttt--tctctatatttttcctctcactat |
317 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||| | ||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||| |
|
|
| T |
26976330 |
tctctcttataaataggagaatacta--actaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat |
26976424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 23 - 317
Target Start/End: Original strand, 27873990 - 27874283
Alignment:
| Q |
23 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacc |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27873990 |
tgttaggtaccagagtaacaaaatattatcacgcatctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
27874089 |
T |
|
| Q |
123 |
tgacaaggggagaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac |
222 |
Q |
| |
|
| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
27874090 |
a-ataaagggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccac |
27874188 |
T |
|
| Q |
223 |
tctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttt--tctctatatttttcctctcactat |
317 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||| ||| |||| ||||||||||||| |||||||||| |
|
|
| T |
27874189 |
tctctcttataaataggagaatacaa--actaacacaaactaggagaaacctcacaggagaagctatttttcctctctatattttttctctcactat |
27874283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 22 - 288
Target Start/End: Complemental strand, 30986830 - 30986566
Alignment:
| Q |
22 |
ctgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaa---cccctc |
118 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||| |
|
|
| T |
30986830 |
ctgttaggtatcagagtaacaaaatattatcacgtagctaaaataagagacgagaaaagaggaactgaacgcacaatattt-acgtggaaagtacccctc |
30986732 |
T |
|
| Q |
119 |
aacctgacaaggggagaaaa--ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaat |
216 |
Q |
| |
|
||| | |||| | |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||| |
|
|
| T |
30986731 |
aacaa-ataaggaaaaaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattgcaggacctctctctaaatgcaaggagagtacaat |
30986633 |
T |
|
| Q |
217 |
taccactctctcttataaataggagaatacaaacactaacactacctaggagaaacctca-caggagaaacta |
288 |
Q |
| |
|
|||||||||||||| ||||||| ||||| ||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
30986632 |
taccactctctcttgtaaatagaagaat------actgacactacctaggagaaacctcatgaggagaaacta |
30986566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 23 - 315
Target Start/End: Complemental strand, 18968194 - 18967912
Alignment:
| Q |
23 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacc |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| | |
|
|
| T |
18968194 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaatacataatattttacgtggaaacccctcaa-c |
18968096 |
T |
|
| Q |
123 |
tgacaaggggagaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaactacaaggagagtacaattacca |
221 |
Q |
| |
|
| ||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||| ||| ||||||||| ||||||||||| ||||| | |
|
|
| T |
18968095 |
aaataaggggaaaaaaccacggggcaagagtagaaaactttcactaagtggaagacaattacaagacttctctctaaatacaaggagagacaaattagc- |
18967997 |
T |
|
| Q |
222 |
ctctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttt--tctctatatttttcctctcact |
315 |
Q |
| |
|
||||||| | |||||||||||||| |||| ||||||||||||||||| ||||||||| ||| ||| |||||||||||||||||| |
|
|
| T |
18967996 |
ctctctcat-gaaataggagaatactaaca----------ctaggagaaacctcacaagagaaactatatttcctctttatatttttcctctcact |
18967912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 69 - 246
Target Start/End: Complemental strand, 30966923 - 30966747
Alignment:
| Q |
69 |
agacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacctgacaaggggag-aaaaccacggggcaagagtagagaactttcact |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| ||||| | ||||| | |||| |||||||||||||||||||||||||||| |
|
|
| T |
30966923 |
agacgagaaaagaggaactgaacacacaatattt-acgtggaaacccatcaacaa-ataagggaaataaaatcacggggcaagagtagagaactttcact |
30966826 |
T |
|
| Q |
168 |
aagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatac |
246 |
Q |
| |
|
|||||||||||||| ||| |||||||||||| | ||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
30966825 |
aagtggaagaaattgcagaacctctctctaaatgcaaggagagtacaattaccactctctcttgtaaatagaagaatac |
30966747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 28 - 215
Target Start/End: Complemental strand, 21966860 - 21966677
Alignment:
| Q |
28 |
ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacctgaca |
127 |
Q |
| |
|
||||||| |||||| ||| ||||||||||||||||| ||| | | ||||||||||||||| |||| | ||||||| | ||||||||||||||| | | |
|
|
| T |
21966860 |
ggtaccaaagtaacgaaacattatcacgcagctaaa-taacatatgagaaaagaggaactaaacataaaatattt-atgtggaaacccctcaataa-ata |
21966764 |
T |
|
| Q |
128 |
aggggagaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaa |
215 |
Q |
| |
|
| |||| |||| || ||||||||||||||||||||||||||| |||||||||||| | ||||||||||||| | ||| |||||||||| |
|
|
| T |
21966763 |
aaggga-aaaatcatggggcaagagtagagaactttcactaaatggaagaaattataagacctctctctaatttcaaagagagtacaa |
21966677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 30967727 - 30967674
Alignment:
| Q |
21 |
actgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacga |
74 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
30967727 |
actgttaggtaccagagtaacaaaatattatcaagcagctaaaataagagacga |
30967674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 192
Target Start/End: Original strand, 23012520 - 23012667
Alignment:
| Q |
42 |
aaaatattatcacgcagctaaaataagagacgag-aaaagaggaactgaacacacaatattttacgtggaaacccctcaacctgacaaggggagaaaacc |
140 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||| ||| |||||||||| || ||||||||||||| | || || ||||||| |||||| |
|
|
| T |
23012520 |
aaaatattatcacgcaactaaaataagagacgagaaaaagaagaattgaacacacatta-tttacgtggaaactcgtc-acaaattaagggga-aaaacc |
23012616 |
T |
|
| Q |
141 |
acggggcaagagtagagaactttcactaagtggaagaaattacaggacctct |
192 |
Q |
| |
|
| ||||||||||||||||||||||||||||| ||||||| || ||||||| |
|
|
| T |
23012617 |
a-tgggcaagagtagagaactttcactaagtgagagaaatttcaagacctct |
23012667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 23 - 361
Target Start/End: Complemental strand, 54546200 - 54545862
Alignment:
| Q |
23 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacc |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
54546200 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagatgagaaaagaggaactgaacatacaatattt-acgtggaaacccctcaaca |
54546102 |
T |
|
| Q |
123 |
tgacaaggggagaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac |
222 |
Q |
| |
|
| ||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54546101 |
a-ataaggggaaaaaaccacggggctagagtagagaactttcactaagtggatgaaattacaggacctctctctaactacaaggagagtacaattaccac |
54546003 |
T |
|
| Q |
223 |
tctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaattttt--ctctatatttttcctctcactattct |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
54546002 |
tctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactattct |
54545903 |
T |
|
| Q |
321 |
actaagaacaagtagttgttgtgttactttgttctgtgatg |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54545902 |
actaagaacaagtagttgttgtgttactttgttctgtgatg |
54545862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 21 - 317
Target Start/End: Original strand, 5823273 - 5823568
Alignment:
| Q |
21 |
actgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5823273 |
actgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa |
5823372 |
T |
|
| Q |
121 |
cctgacaaggggagaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattacc |
220 |
Q |
| |
|
| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5823373 |
caa-ataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattacc |
5823471 |
T |
|
| Q |
221 |
actctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttt--tctctatatttttcctctcactat |
317 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||| | ||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||| |
|
|
| T |
5823472 |
actctctcttataaataggagaatacta--actaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat |
5823568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 23 - 317
Target Start/End: Original strand, 5818513 - 5818806
Alignment:
| Q |
23 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacc |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5818513 |
tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac- |
5818611 |
T |
|
| Q |
123 |
tgacaaggggagaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac |
222 |
Q |
| |
|
| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5818612 |
taataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac |
5818711 |
T |
|
| Q |
223 |
tctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttt--tctctatatttttcctctcactat |
317 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||| | ||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||| |
|
|
| T |
5818712 |
tctctcttataaataggagaatacta--actaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat |
5818806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 21 - 246
Target Start/End: Original strand, 2817261 - 2817486
Alignment:
| Q |
21 |
actgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2817261 |
actgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa |
2817360 |
T |
|
| Q |
121 |
cctgacaaggggagaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattacc |
220 |
Q |
| |
|
| | | |||| |||||||| ||||||||||| |||||| |||||||||||||||||||||| || |||||||||| ||||||||||||||||| ||| |
|
|
| T |
2817361 |
c--aaataagggaaaaaaccacagggcaagagtaaagaactctcactaagtggaagaaattacaagaactctctctaaatacaaggagagtacaatcacc |
2817458 |
T |
|
| Q |
221 |
a--ctctctcttataaataggagaatac |
246 |
Q |
| |
|
| ||||||||||||||||||||||||| |
|
|
| T |
2817459 |
actctctctcttataaataggagaatac |
2817486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 23 - 177
Target Start/End: Original strand, 24659136 - 24659287
Alignment:
| Q |
23 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacc |
122 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| | |
|
|
| T |
24659136 |
tgttaggtaccagagtaataaaatattatcacacagctaaaataagagatgagaaaagaggaactgaacacacaacattttacgtggaaacccctcaa-c |
24659234 |
T |
|
| Q |
123 |
tgacaaggggagaaaaccacggggcaagagtagagaactttcactaagtggaaga |
177 |
Q |
| |
|
| ||||||| ||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
24659235 |
aaataaggggaaaaaaccacggggcaagagt--agaactttcactaagtggaaga |
24659287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 31 - 121
Target Start/End: Complemental strand, 4579360 - 4579270
Alignment:
| Q |
31 |
accagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac |
121 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4579360 |
accagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac |
4579270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 37 - 194
Target Start/End: Original strand, 31204781 - 31204936
Alignment:
| Q |
37 |
gtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacctgacaaggggagaa |
136 |
Q |
| |
|
|||||||||||||| ||||||| ||||| |||||| || |||||||||||||||| |||||||||| |||||||||||||||||| | ||| ||| || |
|
|
| T |
31204781 |
gtaacaaaatattagcacgcagttaaaagaagagatga-aaaagaggaactgaactcacaatattt-acgtggaaacccctcaacaa-ataagaggaaaa |
31204877 |
T |
|
| Q |
137 |
aaccacgg-ggcaagagtagagaactttcactaagtggaagaaattacaggacctctct |
194 |
Q |
| |
|
|| ||||| ||||| ||||||||||||||||||||||| | |||||||| |||||||| |
|
|
| T |
31204878 |
aatcacggaggcaatagtagagaactttcactaagtgggaaaaattacaaaacctctct |
31204936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 177 - 315
Target Start/End: Original strand, 24671173 - 24671301
Alignment:
| Q |
177 |
aaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacactaacactacctaggagaaacctca |
276 |
Q |
| |
|
|||||||| ||| ||||||||| ||||||||||| ||||||| ||||||||| |||||||||||||| ||||||| |||||||||||| |
|
|
| T |
24671173 |
aaattacaagacttctctctaaatacaaggagagacaaattacc-ctctctcttg-aaataggagaatactaacacta----------ggagaaacctca |
24671260 |
T |
|
| Q |
277 |
caggagaaactaatttt--tctctatatttttcctctcact |
315 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
24671261 |
caggagaaactatatttcctctctatatttttcctctcact |
24671301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 161 - 219
Target Start/End: Complemental strand, 35977161 - 35977103
Alignment:
| Q |
161 |
tttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattac |
219 |
Q |
| |
|
||||||||||||||| |||||||| ||| ||||||||| ||||||||||| |||||||| |
|
|
| T |
35977161 |
tttcactaagtggaaaaaattacaagacttctctctaaatacaaggagagaacaattac |
35977103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 315
Target Start/End: Complemental strand, 4579177 - 4579126
Alignment:
| Q |
266 |
gagaaacctcacaggagaaactaatttt--tctctatatttttcctctcact |
315 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
4579177 |
gagaaacctcacaggagaaactatatttcctctctatatttttcctctcact |
4579126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 25877132 - 25877086
Alignment:
| Q |
21 |
actgttaggtaccagagtaacaaaatattatcacgcagctaaaataa |
67 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| ||||| ||||||||| |
|
|
| T |
25877132 |
actgttaggtaccagaataacataatattattacgcaactaaaataa |
25877086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 22 - 356
Target Start/End: Original strand, 30945476 - 30945810
Alignment:
| Q |
22 |
ctgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac |
121 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30945476 |
ctgttaggtatcagagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac |
30945575 |
T |
|
| Q |
122 |
ctgacaaggggagaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattacca |
221 |
Q |
| |
|
| | |||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
30945576 |
a--aataagggaaaaaatcacggggcaagagtagagaactttcactaagtggaagaaattacagaacctctctctaaatacaaggagagtacaattacca |
30945673 |
T |
|
| Q |
222 |
ctctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttt--tctctatatttttcctctcactattc |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
30945674 |
ctctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctctctattc |
30945773 |
T |
|
| Q |
320 |
tactaagaacaagtagttgttgtgttactttgttctg |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30945774 |
tactaagaacaagtagttgttgtgttactttgttctg |
30945810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 21 - 353
Target Start/End: Original strand, 30950181 - 30950513
Alignment:
| Q |
21 |
actgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30950181 |
actgttaggtaccagagtaacaaaatattatcacgcagctaaaataagataagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa |
30950280 |
T |
|
| Q |
121 |
cctgacaaggggagaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattacc |
220 |
Q |
| |
|
| | | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||| |
|
|
| T |
30950281 |
ca--aataagggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagaacctctctctaaatacaaggaaagtacaattacc |
30950378 |
T |
|
| Q |
221 |
actctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttt--tctctatatttttcctctcactatt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
30950379 |
actctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctctctatt |
30950478 |
T |
|
| Q |
319 |
ctactaagaacaagtagttgttgtgttactttgtt |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
30950479 |
ctactaagaacaagtagttgttgtgttactttgtt |
30950513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 21 - 317
Target Start/End: Original strand, 48701819 - 48702114
Alignment:
| Q |
21 |
actgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48701819 |
actgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa |
48701918 |
T |
|
| Q |
121 |
cctgacaaggggagaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattacc |
220 |
Q |
| |
|
| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
48701919 |
caa-ataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaatacc |
48702017 |
T |
|
| Q |
221 |
actctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttt--tctctatatttttcctctcactat |
317 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||| | ||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||| |
|
|
| T |
48702018 |
actctctcttataaataggagaatacta--actaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat |
48702114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 21 - 317
Target Start/End: Complemental strand, 42266222 - 42265927
Alignment:
| Q |
21 |
actgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa |
120 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42266222 |
actgttagataccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa |
42266123 |
T |
|
| Q |
121 |
cctgacaaggggagaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattacc |
220 |
Q |
| |
|
| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
42266122 |
caa-ataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattacc |
42266024 |
T |
|
| Q |
221 |
actctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttt--tctctatatttttcctctcactat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||| ||| |||| ||||||||||||| |||||||||| |
|
|
| T |
42266023 |
actctctcttataaataggagaatacaa--actaacacaaactaggagaaacctcacaggagaagctatttttcctctctatattttttctctcactat |
42265927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 21 - 317
Target Start/End: Complemental strand, 42270941 - 42270646
Alignment:
| Q |
21 |
actgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa |
120 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42270941 |
actgttagataccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa |
42270842 |
T |
|
| Q |
121 |
cctgacaaggggagaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattacc |
220 |
Q |
| |
|
| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
42270841 |
caa-ataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattacc |
42270743 |
T |
|
| Q |
221 |
actctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttt--tctctatatttttcctctcactat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||| ||| |||| ||||||||||||| |||||||||| |
|
|
| T |
42270742 |
actctctcttataaataggagaatacaa--actaacacaaactaggagaaacctcacaggagaagctatttttcctctctatattttttctctcactat |
42270646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 29 - 317
Target Start/End: Original strand, 24520031 - 24520318
Alignment:
| Q |
29 |
gtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacctgacaa |
128 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
24520031 |
gtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaa-ataa |
24520129 |
T |
|
| Q |
129 |
ggggagaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctc |
228 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24520130 |
ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctc |
24520229 |
T |
|
| Q |
229 |
ttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttt--tctctatatttttcctctcactat |
317 |
Q |
| |
|
|||||||||||||||||| | |||||||| | ||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||| |
|
|
| T |
24520230 |
ttataaataggagaatacta--actaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat |
24520318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 23 - 317
Target Start/End: Original strand, 48697131 - 48697425
Alignment:
| Q |
23 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacc |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
48697131 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa-c |
48697229 |
T |
|
| Q |
123 |
tgacaagggg-agaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattacca |
221 |
Q |
| |
|
| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
48697230 |
aaataaggggaaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaatacca |
48697329 |
T |
|
| Q |
222 |
ctctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttt--tctctatatttttcctctcactat |
317 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||| | ||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||| |
|
|
| T |
48697330 |
ctctctcttataaataggagaatacta--actaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat |
48697425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 23 - 315
Target Start/End: Complemental strand, 10427597 - 10427315
Alignment:
| Q |
23 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacc |
122 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
10427597 |
tgttaggtaccagagtaacagaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgcggaaacccctcaa-c |
10427499 |
T |
|
| Q |
123 |
tgacaaggggagaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaactacaaggagagtacaattacca |
221 |
Q |
| |
|
| ||||||| ||||| |||||| || |||||| |||||||||||||||||||| ||||||| ||| ||||||||| ||||||||||| ||||||| |
|
|
| T |
10427498 |
aaataaggggaaaaaactacggggaaaaagtagataactttcactaagtggaagacaattacaagacttctctctaaatacaaggagagacaaattacc- |
10427400 |
T |
|
| Q |
222 |
ctctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttt--tctctatatttttcctctcact |
315 |
Q |
| |
|
||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
10427399 |
ctctctctt-gaaataggagaatactaaca----------ctaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact |
10427315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 36 - 232
Target Start/End: Complemental strand, 48783031 - 48782850
Alignment:
| Q |
36 |
agtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacctgacaaggggaga |
135 |
Q |
| |
|
|||| |||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||| ||||||||| |||||| ||||| | |
|
|
| T |
48783031 |
agtatcaaaatattatcacgcgattaaaataagaaacgagaaaacaggaactgaacacacaatattt-acgtggaaatttctcaacaaataaaggg---a |
48782936 |
T |
|
| Q |
136 |
aaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttat |
232 |
Q |
| |
|
||| || |||| ||||||||||||||||||||||||||| | ||||||||||||| |||| | ||||||||||||||||||||||||| |
|
|
| T |
48782935 |
aaaacatgggg---------agaactttcactaagtggaagaaattagatgacctctctctaaatacatg--gagtacaattaccactctctcttat |
48782850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 148 - 256
Target Start/End: Complemental strand, 1979375 - 1979269
Alignment:
| Q |
148 |
aagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaataca |
247 |
Q |
| |
|
||||||||| |||||||| |||| ||||||||||||| ||||||||| || | ||||||| ||| | |||||||||||||||||||| |||||||||| |
|
|
| T |
1979375 |
aagagtagataactttcagtaagaggaagaaattacacgacctctct--aaatgcaaggagggtatatttaccactctctcttataaacaggagaatact |
1979278 |
T |
|
| Q |
248 |
aacactaac |
256 |
Q |
| |
|
| ||||||| |
|
|
| T |
1979277 |
agcactaac |
1979269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 36615361 - 36615438
Alignment:
| Q |
25 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattt |
102 |
Q |
| |
|
|||||||| ||||||| ||||||||||| | ||| |||||||||| | |||||||||| ||| ||||| ||| ||||| |
|
|
| T |
36615361 |
ttaggtactagagtaataaaatattatcgcacagttaaaataagatatgagaaaagagaaaccgaacatacattattt |
36615438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 30165968 - 30165900
Alignment:
| Q |
34 |
agagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattt |
102 |
Q |
| |
|
|||||||||||||| |||||| || ||||||||||| | ||||||| | ||| |||||||| ||||||| |
|
|
| T |
30165968 |
agagtaacaaaataatatcacacaactaaaataagatatgagaaaaaatgaattgaacacataatattt |
30165900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 21 - 317
Target Start/End: Original strand, 9444090 - 9444385
Alignment:
| Q |
21 |
actgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9444090 |
actgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa |
9444189 |
T |
|
| Q |
121 |
cctgacaaggggagaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattacc |
220 |
Q |
| |
|
| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9444190 |
caa-ataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaatacc |
9444288 |
T |
|
| Q |
221 |
actctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttt--tctctatatttttcctctcactat |
317 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||| | ||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||| |
|
|
| T |
9444289 |
actctctcttataaataggagaatacta--actaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat |
9444385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 23 - 317
Target Start/End: Original strand, 9439372 - 9439665
Alignment:
| Q |
23 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacc |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9439372 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
9439471 |
T |
|
| Q |
123 |
tgacaaggggagaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac |
222 |
Q |
| |
|
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
9439472 |
a-ataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccac |
9439570 |
T |
|
| Q |
223 |
tctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttt--tctctatatttttcctctcactat |
317 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||| | ||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||| |
|
|
| T |
9439571 |
tctctcttataaataggagaatacta--actaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat |
9439665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 4799371 - 4799315
Alignment:
| Q |
40 |
acaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacaca |
96 |
Q |
| |
|
||||||||||||||| | |||||||||||||| |||||||||| || |||||||||| |
|
|
| T |
4799371 |
acaaaatattatcacactgctaaaataagagatgagaaaagagaaattgaacacaca |
4799315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 95
Target Start/End: Complemental strand, 4844943 - 4844870
Alignment:
| Q |
22 |
ctgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacac |
95 |
Q |
| |
|
||||||||||| |||| ||||||| |||||||||| | |||||||||| |||| |||| ||| ||||||||| |
|
|
| T |
4844943 |
ctgttaggtacaagagaaacaaaacattatcacgctgtaaaaataagagttgagataagaagaattgaacacac |
4844870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 21 - 317
Target Start/End: Complemental strand, 41718729 - 41718434
Alignment:
| Q |
21 |
actgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41718729 |
actgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa |
41718630 |
T |
|
| Q |
121 |
cctgacaaggggagaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattacc |
220 |
Q |
| |
|
| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41718629 |
caa-ataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaatacc |
41718531 |
T |
|
| Q |
221 |
actctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttt--tctctatatttttcctctcactat |
317 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||| | ||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||| |
|
|
| T |
41718530 |
actctctcttataaataggagaatacta--actaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat |
41718434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 23 - 317
Target Start/End: Complemental strand, 34360273 - 34359980
Alignment:
| Q |
23 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacc |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
34360273 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtagaaacccctcaaca |
34360174 |
T |
|
| Q |
123 |
tgacaaggggagaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac |
222 |
Q |
| |
|
| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34360173 |
a-ataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac |
34360075 |
T |
|
| Q |
223 |
tctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttt--tctctatatttttcctctcactat |
317 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||| | |||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
34360074 |
tctctcttataaataggagaatacta--actaacacaaactaggagaaatctcacaggagaaactaatttttctctctatattttttctctcactat |
34359980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 23 - 317
Target Start/End: Complemental strand, 41723453 - 41723160
Alignment:
| Q |
23 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacc |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41723453 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
41723354 |
T |
|
| Q |
123 |
tgacaaggggagaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac |
222 |
Q |
| |
|
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
41723353 |
a-ataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccac |
41723255 |
T |
|
| Q |
223 |
tctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttt--tctctatatttttcctctcactat |
317 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||| | ||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||| |
|
|
| T |
41723254 |
tctctcttataaataggagaatacta--actaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat |
41723160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 23 - 321
Target Start/End: Original strand, 29585300 - 29585597
Alignment:
| Q |
23 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacc |
122 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29585300 |
tgttaggtatcagagtaacaaaatattatcatgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
29585399 |
T |
|
| Q |
123 |
tgacaaggggagaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac |
222 |
Q |
| |
|
| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
29585400 |
a-ataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaagagagtacaattaccac |
29585498 |
T |
|
| Q |
223 |
tctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttt--tctctatatttttcctctcactattct |
320 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| || | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
29585499 |
tctctcttataaataggagaatacta--actaatacaaactaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactactct |
29585596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 42 - 317
Target Start/End: Complemental strand, 34352546 - 34352272
Alignment:
| Q |
42 |
aaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacctgacaaggggagaaaacca |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||| |
|
|
| T |
34352546 |
aaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaa-ataaggggaaaaaacca |
34352448 |
T |
|
| Q |
142 |
cggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggag |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34352447 |
cggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggag |
34352348 |
T |
|
| Q |
242 |
aatacaaacactaacactacctaggagaaacctcacaggagaaactaatttt--tctctatatttttcctctcactat |
317 |
Q |
| |
|
||||| | |||||||| | |||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
34352347 |
aatacta--actaacacaaactaggagaaatctcacaggagaaactaatttttctctctatattttttctctcactat |
34352272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 15)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 32 - 317
Target Start/End: Original strand, 5198664 - 5198948
Alignment:
| Q |
32 |
ccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacctgacaaggg |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
5198664 |
ccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaa-ataaggg |
5198762 |
T |
|
| Q |
132 |
gagaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctctta |
231 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5198763 |
gaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctctta |
5198862 |
T |
|
| Q |
232 |
taaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttt--tctctatatttttcctctcactat |
317 |
Q |
| |
|
||||||||||||||| | |||||||| | ||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||| |
|
|
| T |
5198863 |
taaataggagaatacta--actaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat |
5198948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 34 - 313
Target Start/End: Complemental strand, 15603183 - 15602905
Alignment:
| Q |
34 |
agagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacctgacaagggga |
133 |
Q |
| |
|
||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
15603183 |
agagtaagaaaatattatcacgcaattgaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaa-ataagggga |
15603085 |
T |
|
| Q |
134 |
gaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttata |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| | || |||| |||||||||||| ||| |||| || |
|
|
| T |
15603084 |
aaaaaccacggggcaagagtagagaactttcactaagtagaagaaattacaagacctctctctaaatgcatggagtgtacaattaccattctatcttgta |
15602985 |
T |
|
| Q |
234 |
aataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttc--tctatatttttcctctca |
313 |
Q |
| |
|
||||||||||||| | ||||||||| ||| ||||||||||| || | || |||||||||| |||||||||||||||||| |
|
|
| T |
15602984 |
aataggagaatacta--actaacacttactaagagaaacctcatagaaaaatctaatttttctttctatatttttcctctca |
15602905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 825798 - 825632
Alignment:
| Q |
21 |
actgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
825798 |
actgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaaccactcaa |
825699 |
T |
|
| Q |
121 |
cctgacaagggg-agaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagga |
187 |
Q |
| |
|
| | |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
825698 |
-caaataaggggaaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagga |
825632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 23 - 187
Target Start/End: Complemental strand, 830452 - 830288
Alignment:
| Q |
23 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacc |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
830452 |
tgttaggtaccagagtaacaaaatattatcacgcagttaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa-c |
830354 |
T |
|
| Q |
123 |
tgacaagggg-agaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagga |
187 |
Q |
| |
|
| |||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
830353 |
aaataaggggaaaaaaaccacggggcaagagtggagaactttcactaagtggaagaaattacagga |
830288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 30 - 293
Target Start/End: Complemental strand, 28716070 - 28715816
Alignment:
| Q |
30 |
taccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacctgacaag |
129 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||| | ||| |
|
|
| T |
28716070 |
taccagagtaacaaaatattatcacacatttaaaataagagacgacaaaagaggaattgaacacacaatattt-acgtggaaacccctcattaa-ataag |
28715973 |
T |
|
| Q |
130 |
gggagaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctct |
229 |
Q |
| |
|
|||| |||||||| | |||| |||||||||||||| ||||||||||||||||||||| ||||||||| | ||||||||||||||||||||| | || |
|
|
| T |
28715972 |
ggga-aaaaccacaagagaagaatagagaactttcacaaagtggaagaaattacaggacatctctctaaatgcaaggagagtacaattaccaccgtttcc |
28715874 |
T |
|
| Q |
230 |
tataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttt |
293 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| ||| ||||||||| |||| |
|
|
| T |
28715873 |
tataaataggagaat------actaacactacctaggagaaaccttacaagagaaactattttt |
28715816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 237 - 356
Target Start/End: Complemental strand, 830291 - 830170
Alignment:
| Q |
237 |
aggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaattttt--ctctatatttttcctctcactattctactaagaacaagta |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
830291 |
aggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactattctactaagaacaagta |
830192 |
T |
|
| Q |
335 |
gttgttgtgttactttgttctg |
356 |
Q |
| |
|
|||||||||||||||| ||||| |
|
|
| T |
830191 |
gttgttgtgttacttttttctg |
830170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 237 - 356
Target Start/End: Complemental strand, 825635 - 825514
Alignment:
| Q |
237 |
aggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctct--atatttttcctctcactattctactaagaacaagta |
334 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
825635 |
aggagaatacaaacactaacactacctaggagaaacctcgcaggagaaactaatttttctctctatatttttcctctcactattctactaagaacaagta |
825536 |
T |
|
| Q |
335 |
gttgttgtgttactttgttctg |
356 |
Q |
| |
|
|||||||||||||||| ||||| |
|
|
| T |
825535 |
gttgttgtgttacttttttctg |
825514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 30396907 - 30397096
Alignment:
| Q |
19 |
atactgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctc |
118 |
Q |
| |
|
||||| || ||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||| |||||||||| |
|
|
| T |
30396907 |
atactattgggtgccagagtagcaaaatattatcacgcagctaaaataagagacgagaaaagacgaactgaacacac-atatttt-cgttgaaacccctc |
30397004 |
T |
|
| Q |
119 |
aacctgacaaggggagaaaaccacggggcaagagtagagaac-tttcactaagtggaagaaattacaggacctctctctaactacaaggagag |
210 |
Q |
| |
|
|| | | ||||| | |||| ||| |||| |||||||||||| |||||||||||||||||||||||| ||||||| |||| ||||||||||| |
|
|
| T |
30397005 |
aa-caaataagggaaaaaaatcacagggcgagagtagagaacttttcactaagtggaagaaattacaagacctctttctatatacaaggagag |
30397096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 135 - 252
Target Start/End: Complemental strand, 8004277 - 8004161
Alignment:
| Q |
135 |
aaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataa |
234 |
Q |
| |
|
||||| |||||| | || |||| |||||||||| | |||||||||||| | |||||||| ||| | ||| ||||||||||||| |||||||||||||| |
|
|
| T |
8004277 |
aaaacaacggggtatgactagaaaactttcactgaatggaagaaattataaaacctctctttaaatgtaagaagagtacaattac-actctctcttataa |
8004179 |
T |
|
| Q |
235 |
ataggagaatacaaacac |
252 |
Q |
| |
|
|||||||||||| ||||| |
|
|
| T |
8004178 |
ataggagaatactaacac |
8004161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 31592910 - 31592999
Alignment:
| Q |
23 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaa |
112 |
Q |
| |
|
|||| |||| || ||||||| ||||||||||| ||| || |||||||||||||||||||||||| |||| |||||| |||||||||||| |
|
|
| T |
31592910 |
tgttgggtatcaaagtaacataatattatcacacagatagaataagagacgagaaaagaggaacataacatacaataatttacgtggaaa |
31592999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 151 - 244
Target Start/End: Original strand, 13843921 - 13844014
Alignment:
| Q |
151 |
agtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaat |
244 |
Q |
| |
|
|||| |||| ||||| ||||||||||||||||||||||| || | ||| |||||| ||| || |||||||||||| | ||| |||||||||||| |
|
|
| T |
13843921 |
agtatagaattttcattaagtggaagaaattacaggacccctttataaatacaagaagaataaaattaccactctattttaaaaataggagaat |
13844014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 23 - 246
Target Start/End: Original strand, 13840240 - 13840456
Alignment:
| Q |
23 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacc |
122 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||| | || ||||| ||| |||||| ||||||| ||||||| |||||| || || || ||||||| |
|
|
| T |
13840240 |
tgttgggtaccagaataacaaaatattatcacgtaattataataaaagatgagaaaggaggaaccgaacaca--atattt-acatgagaattcctcaaca |
13840336 |
T |
|
| Q |
123 |
tgacaaggggagaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac |
222 |
Q |
| |
|
|||||||| |||||| | || ||||||||||| || ||| || |||| || |||||||| |||||||||||| || ||||||||||||||||| | |
|
|
| T |
13840337 |
a-acaagggg-gaaaac-atggagcaagagtagaaaatttttaccaagtaaaa-aaattacaaaacctctctctaaatataaggagagtacaattacaat |
13840432 |
T |
|
| Q |
223 |
tctctcttataaataggagaatac |
246 |
Q |
| |
|
||||||||| ||||| ||||||| |
|
|
| T |
13840433 |
tctctcttaaaaataaaagaatac |
13840456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 103
Target Start/End: Original strand, 12175768 - 12175828
Alignment:
| Q |
43 |
aaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatatttt |
103 |
Q |
| |
|
||||||||||||||| ||||||||| ||| || |||| || || ||||||||||||||||| |
|
|
| T |
12175768 |
aaatattatcacgcaactaaaataaaagatgataaaaaagaaattgaacacacaatatttt |
12175828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 9358158 - 9358207
Alignment:
| Q |
38 |
taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaact |
87 |
Q |
| |
|
|||| ||||||||| |||||||||||| || ||||||||||||| ||||| |
|
|
| T |
9358158 |
taaccaaatattattacgcagctaaaacaacagacgagaaaagaagaact |
9358207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 315
Target Start/End: Original strand, 30397136 - 30397191
Alignment:
| Q |
262 |
ctaggagaaacctcacaggagaaactaatttt--tctctatatttttcctctcact |
315 |
Q |
| |
|
|||||||||| |||||||||||||||| ||| |||||||||| ||||||||||| |
|
|
| T |
30397136 |
ctaggagaaatctcacaggagaaactatatttcctctctatattgttcctctcact |
30397191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 23 - 361
Target Start/End: Complemental strand, 30235339 - 30234998
Alignment:
| Q |
23 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacc |
122 |
Q |
| |
|
|||| |||||||||||| ||||||||||| || |||||||||||| | | ||||||||||||||||||||||||||| |||||||||||||||||||| | |
|
|
| T |
30235339 |
tgttgggtaccagagtagcaaaatattattacacagctaaaataaaaaatgagaaaagaggaactgaacacacaata-tttacgtggaaacccctcaa-c |
30235242 |
T |
|
| Q |
123 |
tgacaagggg-agaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctct-ctaactacaaggagagtacaattacc |
220 |
Q |
| |
|
| |||||| | ||||||||||| ||||||||| |||||||| ||| | |||||||||||||||||||||| ||| || |||||||||||||||||| |
|
|
| T |
30235241 |
gaataaggggaaaaaaaccacgggataagagtagaaaactttcaataactagaagaaattacaggacctctctcctatttataaggagagtacaattacc |
30235142 |
T |
|
| Q |
221 |
actctctcttataaataggagaatacaaacactaacactacctaggagaaacctca-caggagaaactaatttt--tctctatatttttcctctcactat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30235141 |
actctctcttataaataggagaatacaaacactaacactacgtaagagaaacctcataaggagaaactaatttttctctctatatttttcctctcactac |
30235042 |
T |
|
| Q |
318 |
tctactaagaacaagtagttgttgtgttactttgttctgtgatg |
361 |
Q |
| |
|
|||| | ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
30235041 |
tctattgagaacaagtagttgttgtgttactttgttctctgatg |
30234998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 28 - 315
Target Start/End: Original strand, 16183636 - 16183913
Alignment:
| Q |
28 |
ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacctgaca |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | | |
|
|
| T |
16183636 |
ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa-caaata |
16183734 |
T |
|
| Q |
128 |
aggggagaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaactacaaggagagtacaattaccactctc |
226 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||| ||||||| ||||| |
|
|
| T |
16183735 |
aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagacaattacaagacctctctctaaatacaaggagagacaaattacc-ctctc |
16183833 |
T |
|
| Q |
227 |
tcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttt--tctctatatttttcctctcact |
315 |
Q |
| |
|
|||| |||||||||||||| |||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
16183834 |
tctt-gaaataggagaatactaaca----------ctaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact |
16183913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 21 - 246
Target Start/End: Original strand, 8139962 - 8140183
Alignment:
| Q |
21 |
actgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa |
120 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||| ||||||| |||| ||||||||||||||| |
|
|
| T |
8139962 |
actgttgggtaccagagtaacaaaatattatcacacagctaaaataagagatgagaaaagagaaactgaacgcacaata-tttatgtggaaacccctcaa |
8140060 |
T |
|
| Q |
121 |
cctgacaaggggagaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattacc |
220 |
Q |
| |
|
| | ||||||||||||||| |||| |||| |||| |||||||||| |||||||||||||| | ||||||||||| | ||||||||||| ||||||| |
|
|
| T |
8140061 |
-caaataaggggagaaaaccatggggtaagattagaaaactttcactcagtggaagaaattataagacctctctcttaatacaaggagagacaaattacc |
8140159 |
T |
|
| Q |
221 |
actctctcttataaataggagaatac |
246 |
Q |
| |
|
||||||||| |||||||||||||| |
|
|
| T |
8140160 |
-ctctctctt-gaaataggagaatac |
8140183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 21 - 210
Target Start/End: Original strand, 8138458 - 8138645
Alignment:
| Q |
21 |
actgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa |
120 |
Q |
| |
|
|||||| |||| ||||||| |||| |||||||||||||||||||||||||||||||||||| |||| |||||||| || || | |||||||||||| || |
|
|
| T |
8138458 |
actgttgggtagcagagtatcaaagtattatcacgcagctaaaataagagacgagaaaagaaaaacttaacacacagtaatt-atgtggaaaccccttaa |
8138556 |
T |
|
| Q |
121 |
cctgacaaggggagaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagag |
210 |
Q |
| |
|
| ||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||| |||||| |||||| ||||||||||| |
|
|
| T |
8138557 |
caa-acaaggggagaaaaccacgaggcaagattagagaactttcactaaatggaagaaattacaagacctccctctaaatacaaggagag |
8138645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 36528415 - 36528509
Alignment:
| Q |
23 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctc |
118 |
Q |
| |
|
|||| |||| |||||||||||| || || ||||| ||||||||||||| ||||| ||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
36528415 |
tgttgggtatcagagtaacaaagtaaaattacgcaactaaaataagagatgagaatagaggaattgaacacacaata-tttacgtggaaacccctc |
36528509 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 146; Significance: 8e-77; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 23 - 315
Target Start/End: Original strand, 27226 - 27508
Alignment:
| Q |
23 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacc |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| | |
|
|
| T |
27226 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagagaaactgaacacacaatactttacgtggaaacccctcaa-c |
27324 |
T |
|
| Q |
123 |
tgacaaggggagaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaactacaaggagagtacaattacca |
221 |
Q |
| |
|
| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||| ||||||||||| |||||||| |
|
|
| T |
27325 |
aaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagacaattacaatacttctctctaaatacaaggagagacaaattacca |
27424 |
T |
|
| Q |
222 |
ctctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttt--tctctatatttttcctctcact |
315 |
Q |
| |
|
|||||||| ||||||| |||||| |||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
27425 |
-tctctctt-gaaataggtgaatactaaca----------ctaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact |
27508 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 135; Significance: 3e-70; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 23 - 315
Target Start/End: Complemental strand, 46191546 - 46191266
Alignment:
| Q |
23 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacc |
122 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
|
|
| T |
46191546 |
tgttaggaaccagagtaacaaaatattatcatgcagctaaaataagagacgagaaaagaggaactgaa--cacaatattttacgtggaaacccctcaa-c |
46191450 |
T |
|
| Q |
123 |
tgacaaggggagaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaactacaaggagagtacaattacca |
221 |
Q |
| |
|
| ||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||| ||||||||| || |||||||| ||||||| |
|
|
| T |
46191449 |
aaataaggggaaaaaaccacgggacaagagtagagaactttcactaagtggaagacaattacaagacttctctctaaatagaaggagagacaaattacc- |
46191351 |
T |
|
| Q |
222 |
ctctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttt--tctctatatttttcctctcact |
315 |
Q |
| |
|
||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
46191350 |
ctctctctt-gaaataggagaatactaaca----------ctaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact |
46191266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 28 - 210
Target Start/End: Original strand, 30697120 - 30697300
Alignment:
| Q |
28 |
ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacctgaca |
127 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||| | | |
|
|
| T |
30697120 |
ggtactagagtaacaaaatattatcacgcagctaacataagagacgagaaaagaggaacttaacacaaaatattt-acgtggaaacccctcaacaa-ata |
30697217 |
T |
|
| Q |
128 |
aggggagaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagag |
210 |
Q |
| |
|
|||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| |
|
|
| T |
30697218 |
aggggaaaaagccacgtggcaagagtagagaactttcactaagtggaagaaattacaagacctctttctaaatacaaggagag |
30697300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 23 - 254
Target Start/End: Complemental strand, 4130401 - 4130173
Alignment:
| Q |
23 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacc |
122 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||| ||||||||| |||||||| |
|
|
| T |
4130401 |
tgttaggtacttgagtaacaaaatattatcacgcaactaaaataagtgacgagaaaagaggaactgaacacacaaaattt-acgtggaaatccctcaaca |
4130303 |
T |
|
| Q |
123 |
tgacaaggggagaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaactacaaggagagtacaattacca |
221 |
Q |
| |
|
| || |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||| ||||||||||| ||||||| |
|
|
| T |
4130302 |
a-ataaagggaaaaaaccacggggcaagagtagagaactttcactaagtggaagataattacaagacttctctctaaatacaaggagagacaaattacc- |
4130205 |
T |
|
| Q |
222 |
ctctctcttataaataggagaatacaaacacta |
254 |
Q |
| |
|
||||||||| |||||||| ||||| ||||||| |
|
|
| T |
4130204 |
ctctctctt-gaaataggacaatactaacacta |
4130173 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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