View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13414_high_1 (Length: 839)

Name: NF13414_high_1
Description: NF13414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13414_high_1
NF13414_high_1
[»] chr7 (4 HSPs)
chr7 (142-423)||(48569141-48569421)
chr7 (482-554)||(48569018-48569090)
chr7 (18-117)||(48569420-48569513)
chr7 (564-607)||(33222143-33222186)
[»] chr8 (5 HSPs)
chr8 (231-417)||(10821749-10821937)
chr8 (282-417)||(36145449-36145584)
chr8 (18-135)||(10821501-10821612)
chr8 (489-552)||(10822202-10822265)
chr8 (489-552)||(36145131-36145194)
[»] chr5 (2 HSPs)
chr5 (674-805)||(6370983-6371112)
chr5 (564-607)||(6371174-6371217)


Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-139; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-139
Query Start/End: Original strand, 142 - 423
Target Start/End: Complemental strand, 48569421 - 48569141
Alignment:
Q  142 aattcataatcaattttcacacagaaaacagaagtattggaaaggctgtggtacaaccaaagaaaggaaatgccttgaaggtatttc-agaagatgtcaa 240  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  48569421 aattcataatcaattttcaca--gaaaacagaagtattggaaaggctgtggtacaaccaaagaaaggaaatgccttgaaggtatttccagaagatgtcaa 48569324  T
Q  241 ccttccaagagtagaccaaagtaccataattttccatgaatataccttaaaagatgaggatcctgaatggtcttcattaggctgaacaaccatatgggcc 340  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48569323 ccttccaagagtagaccaaagtaccataattttctatgaatataccttaaaagatgaggatcctgaatggtcttcattaggctgaacaaccatatgggcc 48569224  T
Q  341 attggagcatttccaacaaaataggtattggagagatctcctatgactgatttcaatgcagactcagcacactgcaagatttc 423  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48569223 attggagcatttccaaccaaaaaggtattggagagatctcctatgactgatttcaatgcagactcagcacactgcaagatttc 48569141  T

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Target: chr7; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 482 - 554
Target Start/End: Complemental strand, 48569090 - 48569018
Alignment:
Q  482 ccacaatgaatgtttaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacaggtt 554  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48569090 ccacaatgaatgttcaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacaggtt 48569018  T

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Target: chr7; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 48569513 - 48569420
Alignment:
Q  18 aacaaaatcctcgcattttctaaagtcaaacttgtttttagcaattacttgggacttgatcatgacgaagaatttctatcggaagatttcagcaaaggaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||| ||||||||| ||||||||||||||||||||||||    
T  48569513 aacaaaatcctcgcattttctaaagtcaaacttgtttttagcaattacttgggact------tgaagaagaatttatatcggaagatttcagcaaaggaa 48569420  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 564 - 607
Target Start/End: Complemental strand, 33222186 - 33222143
Alignment:
Q  564 cactgtctcaaccttgtcttcaccgtttgtggatcatcatcttc 607  Q
    |||||| ||||||||||||||||||||||| |||||||||||||    
T  33222186 cactgtatcaaccttgtcttcaccgtttgttgatcatcatcttc 33222143  T

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Target: chr8 (Bit Score: 74; Significance: 2e-33; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 231 - 417
Target Start/End: Original strand, 10821749 - 10821937
Alignment:
Q  231 aagatgtcaaccttccaagagtagaccaaagtaccataa--ttttccatgaatataccttaaaagatgaggatcctgaatggtcttcattaggctgaaca 328  Q
    |||||||||||||||||| ||||||   |||||||| ||  ||| |  | || |||||||||||||||  |||||||  || ||||| ||||||||||||    
T  10821749 aagatgtcaaccttccaatagtagattgaagtaccacaaaatttcctttaaacataccttaaaagatgttgatcctgtctgctcttctttaggctgaaca 10821848  T
Q  329 accatatgggccattggagcatttccaacaaaataggtattggagagatctcctatgactgatttcaatgcagactcagcacactgcaa 417  Q
    ||| |||||||||| ||||||||||| |||||||| ||||| || |||||||||| |||||||||||| ||||| || |||||||||||    
T  10821849 accgtatgggccatcggagcatttccgacaaaatatgtattcgaaagatctcctaagactgatttcaaggcagattctgcacactgcaa 10821937  T

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Target: chr8; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 282 - 417
Target Start/End: Complemental strand, 36145584 - 36145449
Alignment:
Q  282 ataccttaaaagatgaggatcctgaatggtcttcattaggctgaacaaccatatgggccattggagcatttccaacaaaataggtattggagagatctcc 381  Q
    |||||||||||||||  |||||||  || ||||| |||||||||||||| ||||||||||| ||||||||||| |||||||| ||||| || ||||||||    
T  36145584 ataccttaaaagatgttgatcctgtctgctcttctttaggctgaacaacaatatgggccatcggagcatttccgacaaaatatgtatttgaaagatctcc 36145485  T
Q  382 tatgactgatttcaatgcagactcagcacactgcaa 417  Q
     | |||||||||||| ||||| || |||||||||||    
T  36145484 caagactgatttcaaggcagattctgcacactgcaa 36145449  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 10821501 - 10821612
Alignment:
Q  18 aacaaaatcctcgcattttctaaagtcaaacttgtttttagcaattacttgggacttgatcatgacgaagaatttctatcggaagatttcagcaaaggaa 117  Q
    |||||| ||||||||||| | || ||| ||||||||||||||||||||||| || ||||       |||||||||||  | |||||||| ||||||||||    
T  10821501 aacaaagtcctcgcatttgccaatgtcgaacttgtttttagcaattacttgtgatttgaa------gaagaatttctgacagaagatttaagcaaaggaa 10821594  T
Q  118 aaaatgagcaagtataat 135  Q
    | ||||||||||||||||    
T  10821595 agaatgagcaagtataat 10821612  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 489 - 552
Target Start/End: Original strand, 10822202 - 10822265
Alignment:
Q  489 gaatgtttaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacagg 552  Q
    ||||||| ||||||||||| |||||||||||||||||   ||| ||||||||||||||||||||    
T  10822202 gaatgttcaccttacgcatagtttcctctgattcatatactttttctggaaaatgccacacagg 10822265  T

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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 489 - 552
Target Start/End: Complemental strand, 36145194 - 36145131
Alignment:
Q  489 gaatgtttaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacagg 552  Q
    ||||||| |||||||||||||| ||||||||||||||   ||| ||||||||||||||||||||    
T  36145194 gaatgttcaccttacgcatggtatcctctgattcatatactttttctggaaaatgccacacagg 36145131  T

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Target: chr5 (Bit Score: 55; Significance: 4e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 674 - 805
Target Start/End: Complemental strand, 6371112 - 6370983
Alignment:
Q  674 tcttaattcaaacttgattagtaataaacaataaagtacatacacaggacatgtccacaccagtnnnnnnnnnnnnnnnntgaattgattcaatgtattc 773  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||                ||||||||||||||||||||    
T  6371112 tcttaattcaaaattgattagtaataaacaataaagcacatacaca-gacatgtccacaccagt-aaaaaaaattgtaaatgaattgattcaatgtattc 6371015  T
Q  774 caagagtaaaataaattagttaattgattgag 805  Q
    ||||||| ||||||| ||||||||||||||||    
T  6371014 caagagttaaataaactagttaattgattgag 6370983  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 564 - 607
Target Start/End: Complemental strand, 6371217 - 6371174
Alignment:
Q  564 cactgtctcaaccttgtcttcaccgtttgtggatcatcatcttc 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  6371217 cactgtctcaaccttgtcttcaccgtttgtggatcatcatcttc 6371174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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