View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13414_low_3 (Length: 269)
Name: NF13414_low_3
Description: NF13414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13414_low_3 |
 | |
|
| [»] scaffold0345 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 16 - 170
Target Start/End: Complemental strand, 43858152 - 43857998
Alignment:
| Q |
16 |
ataatatggctgaagttgatgccaatcaacaatttcaaatggttgtctcaaagaaaaagaagaagcatcataagcaacaggcagaagctagcaaagggcc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43858152 |
ataatatggctgaagttgatgccaatcaacaatttcaaatggttgtctcaaagaaaaagaagaagcatcataagcaacaggcagaagctagcaaagggcc |
43858053 |
T |
|
| Q |
116 |
ttaccctaccaagcttagggtaagtacttctaaaggttttcaattgaagctctaa |
170 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43858052 |
ttaccctaccaagcttagggtaagtacttctaaaggttttcaattgaagctctaa |
43857998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 164
Target Start/End: Original strand, 43699814 - 43699963
Alignment:
| Q |
15 |
aataatatggctgaagttgatgcc---aatcaacaatttcaaatggttgtctcaaagaaaaagaagaagcatcataagcaacaggcagaagctagcaaag |
111 |
Q |
| |
|
|||||||| ||||||||||||| | ||||||||||||||||||||||| ||||||||||| ||||| ||||| ||||| ||| ||| ||||||| || |
|
|
| T |
43699814 |
aataatatagctgaagttgatgtctctaatcaacaatttcaaatggttgtttcaaagaaaaaaaagaaacatcaaaagcattaggtagaggctagcagag |
43699913 |
T |
|
| Q |
112 |
ggccttaccctaccaagcttagggtaagtacttctaaaggttttcaattgaag |
164 |
Q |
| |
|
|| |||||||||| ||||| |||||| ||||||||||| ||| |||||||| |
|
|
| T |
43699914 |
ggacttaccctacaaagctcagggta---acttctaaaggcttttaattgaag |
43699963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 16 - 166
Target Start/End: Original strand, 10886865 - 10887018
Alignment:
| Q |
16 |
ataatatggctgaagttgatg---ccaatcaacaatttcaaatggttgtctcaaagaaaaagaagaagcatcataagcaacaggcagaagctagcaaagg |
112 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
10886865 |
ataatatggctgaagttgatgtctccaatcaacaatttcaaatggttgtctcaaagaaaaagaagaagcatcagaagcagcaggcagaagctagcaaagg |
10886964 |
T |
|
| Q |
113 |
gccttaccctaccaagcttagggtaagtacttctaaaggttttcaattgaagct |
166 |
Q |
| |
|
| |||| ||||| | ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10886965 |
gacttatcctactaggctcagggtaagtacttctaaaggttttcaattgaagct |
10887018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 16 - 166
Target Start/End: Complemental strand, 2403504 - 2403351
Alignment:
| Q |
16 |
ataatatggctgaagttgatg---ccaatcaacaatttcaaatggttgtctcaaagaaaaagaagaagcatcataagcaacaggcagaagctagcaaagg |
112 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||| |
|
|
| T |
2403504 |
ataatatggctgaagttgatgtctccaatcaacaatttcaaatggttgtctcaaagaaaaagaagaagcatcagaagcagcagacagaagctagcaaagg |
2403405 |
T |
|
| Q |
113 |
gccttaccctaccaagcttagggtaagtacttctaaaggttttcaattgaagct |
166 |
Q |
| |
|
| ||| ||||| | ||| | |||||||||||||||||||||||||| |||||| |
|
|
| T |
2403404 |
gacttttcctactaggctcaaggtaagtacttctaaaggttttcaatagaagct |
2403351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 16 - 109
Target Start/End: Complemental strand, 30228855 - 30228759
Alignment:
| Q |
16 |
ataatatggctgaagttgatgcc---aatcaacaatttcaaatggttgtctcaaagaaaaagaagaagcatcataagcaacaggcagaagctagcaa |
109 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| |
|
|
| T |
30228855 |
ataatatggctgaagttgatgtctctaatcaacaatttcaaatggttgtctcaaagaaaaagaagaaacatcagaagcagcaggcagaagctagcaa |
30228759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 166
Target Start/End: Original strand, 8872605 - 8872749
Alignment:
| Q |
16 |
ataatatggctgaagttgatg---ccaatcaacaatttcaaatggttgtctcaaagaaaaagaagaagcatcataagcaacaggcagaagctagcaaagg |
112 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||| |||| |||||||||||||||||||| |
|
|
| T |
8872605 |
ataatatggctgaagttgatgtctccaatcaacaatttcaaattattgtctcaaagaaaaa---------tcaaaagctgcaggcagaagctagcaaagg |
8872695 |
T |
|
| Q |
113 |
gccttaccctaccaagcttagggtaagtacttctaaaggttttcaattgaagct |
166 |
Q |
| |
|
| ||| ||||| | | | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8872696 |
gatttatcctactaggttcagggtaagtacttctaaaggttttcaattgaagct |
8872749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 166
Target Start/End: Complemental strand, 30228746 - 30228714
Alignment:
| Q |
134 |
ggtaagtacttctaaaggttttcaattgaagct |
166 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
|
|
| T |
30228746 |
ggtaagtacttttaaaggttttcaattgaagct |
30228714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 16 - 170
Target Start/End: Complemental strand, 2158 - 2001
Alignment:
| Q |
16 |
ataatatggctgaagttgatgcc---aatcaacaatttcaaatggttgtctcaaagaaaaagaagaagcatcataagcaacaggcagaagctagcaaagg |
112 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||| |
|
|
| T |
2158 |
ataatatggctgaagttgatgtctctaatcaacaatttcaattggttgtctcaaagaaaaagaagaagcatcaaaagcagcaggtagaagctagcaaagg |
2059 |
T |
|
| Q |
113 |
gccttaccctaccaagcttagggtaagtacttctaaaggttttcaattgaagctctaa |
170 |
Q |
| |
|
||||| |||| | ||| | ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2058 |
aacttacactacaaggctcaaggtaagtacttataaaggttttcaattgaagctctaa |
2001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 16 - 170
Target Start/End: Complemental strand, 11357797 - 11357640
Alignment:
| Q |
16 |
ataatatggctgaagttgatgcc---aatcaacaatttcaaatggttgtctcaaagaaaaagaagaagcatcataagcaacaggcagaagctagcaaagg |
112 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||| |
|
|
| T |
11357797 |
ataatatggctgaagttgatgtctctaatcaacaatttcaattggttgtctcaaagaaaaagaagaagcatcaaaagcagcaggtagaagctagcaaagg |
11357698 |
T |
|
| Q |
113 |
gccttaccctaccaagcttagggtaagtacttctaaaggttttcaattgaagctctaa |
170 |
Q |
| |
|
||||| |||| | ||| | ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
11357697 |
aacttacactacaaggctcaaggtaagtacttataaaggttttcaattgaagctctaa |
11357640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 15 - 170
Target Start/End: Original strand, 26307639 - 26307794
Alignment:
| Q |
15 |
aataatatggctgaagttgatgccaatcaacaatttcaaatggttgtctcaaagaaaaagaagaagcatcataagcaacaggcagaagctagcaaagggc |
114 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||| |||||||||||| |||||||||||||||| |||| ||||| |||||||||||||||||||||| |
|
|
| T |
26307639 |
aataatatggctgaagttgatcccgatcaacaattttaaatggttgtcttaaagaaaaagaagaagaatcaaaagcagcaggcagaagctagcaaagggc |
26307738 |
T |
|
| Q |
115 |
cttaccctaccaagcttagggtaagtacttctaaaggttttcaattgaagctctaa |
170 |
Q |
| |
|
||||| | || | ||| ||||| |||| |||||||||||||||| |||| |||||| |
|
|
| T |
26307739 |
cttactccacaaggctcagggttagtatttctaaaggttttcaactgaaactctaa |
26307794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 32 - 167
Target Start/End: Complemental strand, 20121851 - 20121716
Alignment:
| Q |
32 |
tgatgccaatcaacaatttcaaatggttgtctcaaagaaaaagaagaagcatcataagcaacaggcagaagctagcaaagggccttaccctaccaagctt |
131 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||| ||||||||| | ||| |
|
|
| T |
20121851 |
tgatgccgatcaacaatttcaaatggttgtctcaaagaaaaagaagaataatcaaaagcggcaggcagaagctagcaaagggtcttaccctagaaggctc |
20121752 |
T |
|
| Q |
132 |
agggtaagtacttctaaaggttttcaattgaagctc |
167 |
Q |
| |
|
| ||| | |||||||||||||||||||||||||||| |
|
|
| T |
20121751 |
atggttactacttctaaaggttttcaattgaagctc |
20121716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 160
Target Start/End: Complemental strand, 41553036 - 41552915
Alignment:
| Q |
39 |
aatcaacaatttcaaatggttgtctcaaagaaaaagaagaagcatcataagcaacaggcagaagctagcaaagggccttaccctaccaagcttagggtaa |
138 |
Q |
| |
|
|||||||||||| ||| || ||| |||||| |||||||| ||||| | ||| | | || |||||| ||||| | ||||||||| | |||||||||| |
|
|
| T |
41553036 |
aatcaacaattttaaaaagtgatcttaaagaataagaagaaacatcaaatgcagccgccataagctaacaaagagacttaccctatctgacttagggtaa |
41552937 |
T |
|
| Q |
139 |
gtacttctaaaggttttcaatt |
160 |
Q |
| |
|
||| |||||||| ||||||||| |
|
|
| T |
41552936 |
gtatttctaaagattttcaatt |
41552915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University