View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13414_low_5 (Length: 236)
Name: NF13414_low_5
Description: NF13414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13414_low_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 19620514 - 19620732
Alignment:
| Q |
18 |
agggaacaagaacgaagaattggagacggtgtgattttgcaaattatgacggtgcaaatcacgaaattgatgagttgtgattctgaggagtgagttgcga |
117 |
Q |
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| T |
19620514 |
agggaacaagaacgaagaattggagacagtgtgattttgaaaattttgacggtgcaaatcgcgaaattgatgagttgtgatcataaggagtgagttgcga |
19620613 |
T |
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| Q |
118 |
ttatgagccagtatgattttgcaataaagaatgatggttcaacgatttaatgttaatgatttgagatgaggaatgaagatttcgtgattcagtgtagggt |
217 |
Q |
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| T |
19620614 |
ttatgagccagtatgattttgtaataaagaatgatgattcaacgatttaatgttaatgatttgcgatgaggaatgaagattccgtgattcagtgtagggt |
19620713 |
T |
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| Q |
218 |
gagagatagagggttaggg |
236 |
Q |
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| T |
19620714 |
gagagatagagggttaggg |
19620732 |
T |
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