View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13415_high_2 (Length: 597)
Name: NF13415_high_2
Description: NF13415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13415_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 536; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 10 - 580
Target Start/End: Complemental strand, 46825164 - 46824593
Alignment:
| Q |
10 |
attatactgaaatggtattttataacatcaaggatccatgtttggcaacatggaatgccatcatatcaggttatagtttatatggtcttgagcatacagc |
109 |
Q |
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| T |
46825164 |
attatgctgaaaaggtattttataacatcaaggatccatgtttggcaacatggaatgccatcatatcaggttatagtttatatggtcttgagcatacagc |
46825065 |
T |
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| Q |
110 |
tttcggttgttattctaaactgcaagaacaagggttaaaaccggataaaatcaccttcttgggagttttggcagcatgcacgcacggggaacttgtctat |
209 |
Q |
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| T |
46825064 |
tttcggttgttattctaaactgcaagaacaagggttaaaaccggataaaatcaccttcttgggagttttggcagcatgcacgcatgggggacttgtctat |
46824965 |
T |
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| Q |
210 |
ttaggactggaatacttcaatatcatgactaaagagtatggtttgatgccgagtctgcaacattatgcatgcatagttgctctattaggtagagaaggct |
309 |
Q |
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| T |
46824964 |
ttaggactggaatacttcaatatcatgactaaagagtatggtttgatgcccagtctgcaacattatgcatgcatagttgctctattaggtaaagaaggct |
46824865 |
T |
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| Q |
310 |
tgttcaaggaagcaattgaatttataaacaaaatggagattcagcccgattctgctgtctggggagctttgctaaatgcttgttgcatccaacgagaggt |
409 |
Q |
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| T |
46824864 |
tgttcaaggaagcaattgaatttataaacaaaatggagattcagcccgattctgctgtctggggagctttgttaaatgcttgttgcatccaacgagaggt |
46824765 |
T |
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| Q |
410 |
gaagcttggggaatgcttggcaa-aaaattgtttctattaaatcacaaaaatggtggattttatgtattaatgtcaaatctttatgccattgttgggaga |
508 |
Q |
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| T |
46824764 |
gaagcttggggaatgcttggcaaaaaaattgtttctattaaatcacaaaaatggtggattttatgtattaatgtcaaatctttatgccattgttgggaga |
46824665 |
T |
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| Q |
509 |
tgggatgatgtagcaagggtgagggaaatgatgaaagatagtggaggagatggatgttcaggtgttagtgtt |
580 |
Q |
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| T |
46824664 |
tgggatgatgtagcaagggtgagggaaatgatgaaagatagtggaggagatggatgttcaggtgttagtgtt |
46824593 |
T |
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