View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13415_high_3 (Length: 425)
Name: NF13415_high_3
Description: NF13415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13415_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 20 - 417
Target Start/End: Complemental strand, 39308050 - 39307653
Alignment:
| Q |
20 |
ttgatcatcttcttgacaaatctcttttccatttataacaccagtaccaacagaaaccgaccgcatcaagttaagtgcttctaaatcgcttcttgaaggc |
119 |
Q |
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| T |
39308050 |
ttgatcatcttcttgacaaatctcttttccatttataacaccagtaccaacagaaaccgaccgcatcaagttaagtgcttctaaatcacttcttgaaggc |
39307951 |
T |
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| Q |
120 |
ttacgcttaaccgaatacccgactttcctcccattacagtacataatccatagaggagttgaaaacaagttactgttattgttacaagatcctgaggtag |
219 |
Q |
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| T |
39307950 |
ttacgcttaaccgaatacccgactttcctcccattacagtacataatccaaagaggagttgaaaacaagttactgttattgttacaagatcctgaggtag |
39307851 |
T |
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| Q |
220 |
cactttctagcacaattctcaacgttcctcctctcatttcctttgctaaaacacttgttggaattgcaagttctaaaagaagaatagggtttgtggaatt |
319 |
Q |
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| T |
39307850 |
cactttctagcacaattctcaacgttcctcctctcatttcctttgctaaaacacttgttggaattgcaagttctaaaagaagaatagggtttgtggaatt |
39307751 |
T |
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| Q |
320 |
tgagttggattgaatacaaaaacttacttttcctttacggtatccgaatatcgtgccagtaattgttgtagatgtcatgagtgaagaatgtgatgatg |
417 |
Q |
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| T |
39307750 |
tgagctggattgaatacaaaaacttacttttcctttacggtatccgaatatcgtgccagtaattgttgtagatgtcatgagtgaagaatgtgatgatg |
39307653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 234 - 407
Target Start/End: Complemental strand, 37494870 - 37494697
Alignment:
| Q |
234 |
attctcaacgttcctcctctcatttcctttgctaaaacacttgttggaattgcaagttctaaaagaagaatagggtttgtggaatttgagttggattgaa |
333 |
Q |
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| T |
37494870 |
attctcaatgttcctcctcgcatttccctcgctaaaatgtttgctggtactgctaattctagaaggagaattggggtagtggagtttgcatttgattgaa |
37494771 |
T |
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| Q |
334 |
tacaaaaacttacttttcctttacggtatccgaatatcgtgccagtaattgttgtagatgtcatgagtgaagaa |
407 |
Q |
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| T |
37494770 |
tgcaaaaacttatttttcctttgcggtatccaaatattgtgcctgtaatggtggtggatggtgtgagtgaagaa |
37494697 |
T |
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