View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13415_high_4 (Length: 238)
Name: NF13415_high_4
Description: NF13415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13415_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 37345815 - 37346024
Alignment:
| Q |
1 |
ttttaataaaaatagtttgaaactttgaattataccttcatatcctccacataagaagggaatccaccaatggtcatgaaagttaggaatgaaaacacaa |
100 |
Q |
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| T |
37345815 |
ttttaataaaaatagtttgaaactttgaattataccttcatatcctccacataagaagggaatccaccaatggtcatgaaagttaggaatgaaaacacaa |
37345914 |
T |
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| Q |
101 |
acataagaagtgaacctctatcctgaaaaggaaaaccaaaagtgacatgcaaaattagaagatactagctaaactttagatcagttaatgtaatataagg |
200 |
Q |
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| T |
37345915 |
acataagaagtgaacctctatcctga-----------aaaagtgacatgcaaaattagaagatactagctaaactttaggtcaggtaatgtaatataagg |
37346003 |
T |
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| Q |
201 |
tattgttaattacctgaattg |
221 |
Q |
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| T |
37346004 |
tattgttaattacctgaattg |
37346024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 128
Target Start/End: Complemental strand, 37332046 - 37331951
Alignment:
| Q |
33 |
taccttcatatcctccacataagaagggaatccaccaatggtcatgaaagttaggaatgaaaacacaaacataagaagtgaacctctatcctgaaa |
128 |
Q |
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| T |
37332046 |
taccttcatgtcttccacaaatgaaggaaatccaccaattgtcatgaaagttaagaatccagagataaaagaaagaagtgaacctcgatcctgaaa |
37331951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 37323087 - 37323030
Alignment:
| Q |
33 |
taccttcatatcctccacataagaagggaatccaccaatggtcatgaaagttaggaat |
90 |
Q |
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| T |
37323087 |
taccttcatgtcttccacaaaggaaggaaatccaccaatgctcatgaaagttaagaat |
37323030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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