View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13415_low_5 (Length: 226)

Name: NF13415_low_5
Description: NF13415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13415_low_5
NF13415_low_5
[»] chr5 (19 HSPs)
chr5 (19-140)||(15604794-15604915)
chr5 (166-226)||(15143214-15143274)
chr5 (172-226)||(15551925-15551979)
chr5 (172-226)||(18466411-18466465)
chr5 (172-226)||(25803707-25803761)
chr5 (172-226)||(26097421-26097475)
chr5 (172-226)||(27912219-27912273)
chr5 (175-226)||(18509853-18509904)
chr5 (171-226)||(18596325-18596380)
chr5 (172-226)||(3373576-3373630)
chr5 (172-226)||(18468698-18468752)
chr5 (172-226)||(26098787-26098841)
chr5 (172-226)||(27910135-27910189)
chr5 (171-224)||(21288528-21288581)
chr5 (174-226)||(18511748-18511800)
chr5 (171-226)||(6661979-6662034)
chr5 (179-226)||(17415846-17415893)
chr5 (172-226)||(40221282-40221336)
chr5 (137-168)||(15604598-15604629)
[»] chr6 (11 HSPs)
chr6 (170-226)||(26933104-26933160)
chr6 (172-226)||(12196050-12196104)
chr6 (171-226)||(30035142-30035197)
chr6 (172-226)||(5275874-5275928)
chr6 (172-226)||(30966923-30966977)
chr6 (170-226)||(19705111-19705167)
chr6 (172-226)||(2629425-2629479)
chr6 (174-226)||(20526548-20526600)
chr6 (171-226)||(18317750-18317805)
chr6 (168-226)||(17011775-17011833)
chr6 (172-226)||(22858482-22858536)
[»] chr7 (31 HSPs)
chr7 (171-226)||(7352192-7352247)
chr7 (172-226)||(7349813-7349867)
chr7 (172-226)||(31156446-31156500)
chr7 (171-226)||(37412662-37412717)
chr7 (172-226)||(443326-443380)
chr7 (172-226)||(3035415-3035469)
chr7 (172-226)||(7092714-7092768)
chr7 (172-226)||(7094961-7095015)
chr7 (172-226)||(7472520-7472574)
chr7 (172-226)||(11756925-11756979)
chr7 (172-226)||(18345237-18345291)
chr7 (172-226)||(20299155-20299209)
chr7 (172-226)||(28487249-28487303)
chr7 (171-226)||(3676996-3677051)
chr7 (171-226)||(20625733-20625788)
chr7 (171-226)||(20629624-20629679)
chr7 (171-226)||(20642043-20642098)
chr7 (171-226)||(21989852-21989907)
chr7 (172-226)||(7470567-7470621)
chr7 (172-226)||(38395986-38396040)
chr7 (172-226)||(47865328-47865382)
chr7 (172-226)||(1606171-1606225)
chr7 (172-226)||(1849665-1849719)
chr7 (172-226)||(21470829-21470883)
chr7 (172-226)||(28485261-28485315)
chr7 (172-226)||(38393683-38393737)
chr7 (182-226)||(20297108-20297152)
chr7 (172-226)||(42331539-42331593)
chr7 (180-226)||(43254023-43254069)
chr7 (180-226)||(24258166-24258212)
chr7 (182-226)||(10690684-10690728)
[»] chr4 (13 HSPs)
chr4 (171-226)||(44600374-44600429)
chr4 (169-226)||(24347956-24348013)
chr4 (171-226)||(56030188-56030243)
chr4 (172-226)||(5100743-5100797)
chr4 (172-226)||(22135165-22135219)
chr4 (170-226)||(38890647-38890703)
chr4 (171-226)||(47211254-47211309)
chr4 (172-226)||(14787967-14788021)
chr4 (172-226)||(22132933-22132987)
chr4 (170-226)||(17662772-17662828)
chr4 (172-226)||(14789517-14789571)
chr4 (174-226)||(19322410-19322463)
chr4 (172-226)||(10112626-10112680)
[»] chr8 (9 HSPs)
chr8 (169-226)||(3873747-3873804)
chr8 (172-226)||(3265698-3265752)
chr8 (172-226)||(32339094-32339148)
chr8 (172-226)||(41384493-41384547)
chr8 (172-226)||(43529871-43529925)
chr8 (171-226)||(15808961-15809016)
chr8 (172-226)||(28283759-28283813)
chr8 (173-226)||(41382420-41382473)
chr8 (172-226)||(608470-608524)
[»] chr3 (16 HSPs)
chr3 (171-226)||(1313081-1313136)
chr3 (172-226)||(746422-746476)
chr3 (172-226)||(10622073-10622127)
chr3 (172-226)||(25533107-25533161)
chr3 (172-226)||(41848804-41848858)
chr3 (174-226)||(42989954-42990006)
chr3 (171-226)||(455572-455627)
chr3 (171-226)||(53918196-53918251)
chr3 (172-226)||(457950-458004)
chr3 (172-226)||(42991953-42992007)
chr3 (172-226)||(51943042-51943096)
chr3 (172-226)||(53916028-53916082)
chr3 (171-226)||(4104429-4104484)
chr3 (172-226)||(6561613-6561667)
chr3 (172-226)||(27636158-27636212)
chr3 (171-212)||(27000082-27000123)
[»] chr1 (23 HSPs)
chr1 (171-226)||(17325173-17325228)
chr1 (171-226)||(24325346-24325401)
chr1 (172-226)||(4131828-4131882)
chr1 (172-226)||(9459959-9460013)
chr1 (172-226)||(9463786-9463840)
chr1 (172-226)||(39931762-39931816)
chr1 (172-226)||(46432582-46432636)
chr1 (172-226)||(47905956-47906010)
chr1 (172-226)||(48664852-48664906)
chr1 (170-226)||(28998790-28998846)
chr1 (170-226)||(29004506-29004562)
chr1 (172-226)||(31736061-31736115)
chr1 (172-226)||(6115663-6115718)
chr1 (171-226)||(15295385-15295440)
chr1 (172-226)||(6997214-6997268)
chr1 (172-226)||(27337478-27337532)
chr1 (172-226)||(27339676-27339730)
chr1 (172-226)||(45693970-45694024)
chr1 (170-226)||(2949761-2949817)
chr1 (182-225)||(13785792-13785835)
chr1 (172-226)||(16561131-16561185)
chr1 (182-222)||(10115466-10115506)
chr1 (182-226)||(32260746-32260790)
[»] scaffold1674 (1 HSPs)
scaffold1674 (172-226)||(41-95)
[»] chr2 (9 HSPs)
chr2 (172-226)||(23452775-23452829)
chr2 (172-226)||(42924040-42924094)
chr2 (169-226)||(35218511-35218568)
chr2 (172-226)||(35216130-35216184)
chr2 (171-226)||(27136451-27136506)
chr2 (171-226)||(42452448-42452503)
chr2 (172-226)||(27583853-27583907)
chr2 (179-226)||(34575649-34575696)
chr2 (182-226)||(28568346-28568390)
[»] scaffold0468 (1 HSPs)
scaffold0468 (173-226)||(2131-2184)
[»] scaffold0154 (1 HSPs)
scaffold0154 (171-226)||(12007-12062)
[»] scaffold0031 (1 HSPs)
scaffold0031 (172-226)||(78883-78937)
[»] scaffold0005 (2 HSPs)
scaffold0005 (172-226)||(51709-51763)
scaffold0005 (172-226)||(50159-50213)
[»] scaffold0511 (1 HSPs)
scaffold0511 (171-226)||(1734-1789)
[»] scaffold0133 (1 HSPs)
scaffold0133 (172-226)||(4546-4600)


Alignment Details
Target: chr5 (Bit Score: 114; Significance: 6e-58; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 15604915 - 15604794
Alignment:
Q  19 atagcgtcaacagcgacacagatcagtacatccttcgacattaggagtaaggtattaacacgagaaatgcatgttgttacgaaaggatctttcttgcacc 118  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15604915 atagcgtcaacagcgacacagatcagtacatccttcgacactaggagtaaggtattaacacgagaaatgcatgttgttacgaaaggatctttcttgcacc 15604816  T
Q  119 agcatgaccgtgtattcgatta 140  Q
    ||||||||| ||||||||||||    
T  15604815 agcatgaccatgtattcgatta 15604794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 15143214 - 15143274
Alignment:
Q  166 catttttgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  15143214 catttttgttatagtatgactcaaaatttgatggatggagaatattgttgctaaaaatata 15143274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 15551925 - 15551979
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  15551925 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatata 15551979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 18466411 - 18466465
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  18466411 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatata 18466465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 25803707 - 25803761
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  25803707 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatata 25803761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 26097421 - 26097475
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  26097421 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatata 26097475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 27912219 - 27912273
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  27912219 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatata 27912273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 175 - 226
Target Start/End: Complemental strand, 18509904 - 18509853
Alignment:
Q  175 tgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  18509904 tgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatata 18509853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 18596325 - 18596380
Alignment:
Q  171 ttgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||    
T  18596325 ttgttgtactatgactcaaaatttgatggatggagaatattgttgctaaaaatata 18596380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 3373630 - 3373576
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    ||||||||||||||||| || ||||||||| ||||||||||||||||||||||||    
T  3373630 tgttgtagtatgactcagaatttgatggatggagaatattgttgctaaaaatata 3373576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 18468698 - 18468752
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||    
T  18468698 tgttgtagtatgactcaaaatttgatggatggagaatatttttgctaaaaatata 18468752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 26098841 - 26098787
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||    
T  26098841 tgttgtagtatgactcaaaatttgatggatggagaatattattgctaaaaatata 26098787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 27910135 - 27910189
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||    
T  27910135 tgttgtagtatgactcaaaatttgatggatggagaatattattgctaaaaatata 27910189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 21288528 - 21288581
Alignment:
Q  171 ttgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaata 224  Q
    |||||||||||| |||||||| ||||||||| ||||||||||||||||||||||    
T  21288528 ttgttgtagtataactcaaaatttgatggatggagaatattgttgctaaaaata 21288581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 18511800 - 18511748
Alignment:
Q  174 ttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||| |||||||||  |||||||||||||||||||||||    
T  18511800 ttgtagtatgactcaaaatttgatggatgaagaatattgttgctaaaaatata 18511748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 6662034 - 6661979
Alignment:
Q  171 ttgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||| |||| |||||||||  |||||||||||||||||||||||    
T  6662034 ttgttgtagtatgacttaaaacttgatggatgaagaatattgttgctaaaaatata 6661979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 17415893 - 17415846
Alignment:
Q  179 gtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    ||||||||||||| |||||||||  |||||||||||||||||||||||    
T  17415893 gtatgactcaaaatttgatggatgaagaatattgttgctaaaaatata 17415846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 40221282 - 40221336
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||| || || |||  |||||||||||||||||||||||    
T  40221282 tgttgtagtatgactcaaaatttaattgatgaagaatattgttgctaaaaatata 40221336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 168
Target Start/End: Complemental strand, 15604629 - 15604598
Alignment:
Q  137 attatccccattttcataccatgatctaccat 168  Q
    ||||||||||||||||||||||||||||||||    
T  15604629 attatccccattttcataccatgatctaccat 15604598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 170 - 226
Target Start/End: Complemental strand, 26933160 - 26933104
Alignment:
Q  170 tttgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  26933160 tttgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatata 26933104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 12196104 - 12196050
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  12196104 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatata 12196050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 30035197 - 30035142
Alignment:
Q  171 ttgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  30035197 ttgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatata 30035142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 5275928 - 5275874
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  5275928 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatata 5275874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 30966923 - 30966977
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||    
T  30966923 tgttgtagtatgactccaaatttgatggatggagaatattgttgctaaaaatata 30966977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 226
Target Start/End: Complemental strand, 19705167 - 19705111
Alignment:
Q  170 tttgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||||| ||||||||   |||||||||||||||||||||||    
T  19705167 tttgttgtagtatgactcaaaatttgatggaagaagaatattgttgctaaaaatata 19705111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 2629479 - 2629425
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||| ||||||||   |||||||||||||||||||||||    
T  2629479 tgttgtagtatgactcaaaatttgatggaagaagaatattgttgctaaaaatata 2629425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 226
Target Start/End: Original strand, 20526548 - 20526600
Alignment:
Q  174 ttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||| ||||||| |  |||||||||||||||||||||||    
T  20526548 ttgtagtatgactcaaaatttgatgggtgaagaatattgttgctaaaaatata 20526600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 18317750 - 18317805
Alignment:
Q  171 ttgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    ||||||||||||||||||||| |||| |||   |||||||||||||||||||||||    
T  18317750 ttgttgtagtatgactcaaaatttgaaggaagaagaatattgttgctaaaaatata 18317805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 17011775 - 17011833
Alignment:
Q  168 tttttgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    ||||| ||||||||||||| |||| |||||||||  |||||||| ||||||||||||||    
T  17011775 tttttattgtagtatgacttaaaatttgatggatgaagaatattattgctaaaaatata 17011833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 22858536 - 22858482
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||| |||||||||  |||||||||||  ||||||||||    
T  22858536 tgttgtagtatgactcaaaatttgatggatgaagaatattgttaataaaaatata 22858482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 7352247 - 7352192
Alignment:
Q  171 ttgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7352247 ttgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatata 7352192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 7349867 - 7349813
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7349867 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatata 7349813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 31156500 - 31156446
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31156500 tgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatata 31156446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 37412717 - 37412662
Alignment:
Q  171 ttgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  37412717 ttgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatata 37412662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 443326 - 443380
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  443326 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatata 443380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 3035415 - 3035469
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  3035415 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatata 3035469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 7092768 - 7092714
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  7092768 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatata 7092714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 7095015 - 7094961
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  7095015 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatata 7094961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 7472574 - 7472520
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  7472574 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatata 7472520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 11756925 - 11756979
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  11756925 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatata 11756979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 18345237 - 18345291
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  18345237 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatata 18345291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 20299155 - 20299209
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  20299155 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatata 20299209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 28487249 - 28487303
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  28487249 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatata 28487303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 3676996 - 3677051
Alignment:
Q  171 ttgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    ||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||    
T  3676996 ttgttgtagtatgactcaaaatttgatagatggagaatattgttgctaaaaatata 3677051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 20625733 - 20625788
Alignment:
Q  171 ttgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    ||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  20625733 ttgttctagtatgactcaaaatttgatggatggagaatattgttgctaaaaatata 20625788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 20629624 - 20629679
Alignment:
Q  171 ttgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    ||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  20629624 ttgttctagtatgactcaaaatttgatggatggagaatattgttgctaaaaatata 20629679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 20642043 - 20642098
Alignment:
Q  171 ttgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    ||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  20642043 ttgttctagtatgactcaaaatttgatggatggagaatattgttgctaaaaatata 20642098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 21989852 - 21989907
Alignment:
Q  171 ttgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    ||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||    
T  21989852 ttgttgtagtatgacccaaaatttgatggatggagaatattgttgctaaaaatata 21989907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 7470621 - 7470567
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||    
T  7470621 tgttgtagtatgactcaaaatttgatggatggagaatattattgctaaaaatata 7470567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 38395986 - 38396040
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||    
T  38395986 tgttgtagtatgactccaaatttgatggatggagaatattgttgctaaaaatata 38396040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 47865328 - 47865382
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||    
T  47865328 tgttgtagtatgactccaaatttgatggatggagaatattgttgctaaaaatata 47865382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 1606171 - 1606225
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||| ||||||||   |||||||||||||||||||||||    
T  1606171 tgttgtagtatgactcaaaatttgatggaagaagaatattgttgctaaaaatata 1606225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 1849665 - 1849719
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||| ||||||||   |||||||||||||||||||||||    
T  1849665 tgttgtagtatgactcaaaatttgatggaagaagaatattgttgctaaaaatata 1849719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 21470883 - 21470829
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    ||||||||| |||||| ||| ||||||||| ||||||||||||||||||||||||    
T  21470883 tgttgtagtttgactccaaatttgatggatggagaatattgttgctaaaaatata 21470829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 28485261 - 28485315
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    ||||||||||||| |||||| |||||||||  |||||||||||||||||||||||    
T  28485261 tgttgtagtatgattcaaaatttgatggatgaagaatattgttgctaaaaatata 28485315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 38393683 - 38393737
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    ||||||||||||| || ||| ||||||||| ||||||||||||||||||||||||    
T  38393683 tgttgtagtatgattctaaatttgatggatggagaatattgttgctaaaaatata 38393737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 20297108 - 20297152
Alignment:
Q  182 tgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||    
T  20297108 tgactcaaaatttgatggatggagaatattgttgctaaaaatata 20297152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 42331593 - 42331539
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    ||||||||||||||| |||| |||||| ||  |||||||||||||||||||||||    
T  42331593 tgttgtagtatgacttaaaatttgatgaatgaagaatattgttgctaaaaatata 42331539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 226
Target Start/End: Complemental strand, 43254069 - 43254023
Alignment:
Q  180 tatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||| ||||||| ||||||||| ||||||||||||||||||||||||    
T  43254069 tatgtctcaaaatttgatggatggagaatattgttgctaaaaatata 43254023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 226
Target Start/End: Original strand, 24258166 - 24258212
Alignment:
Q  180 tatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||| ||||||||   |||||||||||||||||||||||    
T  24258166 tatgactcaaaatttgatggaagaagaatattgttgctaaaaatata 24258212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 10690684 - 10690728
Alignment:
Q  182 tgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||| ||||||||  ||||| ||||||||||||||||||    
T  10690684 tgactcaaaatttgatggagggagaagattgttgctaaaaatata 10690728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 44600429 - 44600374
Alignment:
Q  171 ttgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  44600429 ttgttgtagtatgactcaaaaattgatggatggagaatattgttgctaaaaatata 44600374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 169 - 226
Target Start/End: Original strand, 24347956 - 24348013
Alignment:
Q  169 ttttgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  24347956 ttttgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatata 24348013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 56030188 - 56030243
Alignment:
Q  171 ttgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  56030188 ttgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatata 56030243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 5100743 - 5100797
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  5100743 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatata 5100797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 22135219 - 22135165
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  22135219 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatata 22135165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 170 - 226
Target Start/End: Complemental strand, 38890703 - 38890647
Alignment:
Q  170 tttgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||    
T  38890703 tttgttgtagcatgactcaaaatttgatggatggagaatattgttgctaaaaatata 38890647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 47211309 - 47211254
Alignment:
Q  171 ttgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||    
T  47211309 ttgttgtagtatgacttaaaatttgatggatggagaatattgttgctaaaaatata 47211254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 14788021 - 14787967
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  14788021 tgttgtagtatgactcaaaatttgatggatggagaataatgttgctaaaaatata 14787967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 22132987 - 22132933
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    ||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||    
T  22132987 tgttgtagtatgattcaaaatttgatggatggagaatattgttgctaaaaatata 22132933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 226
Target Start/End: Complemental strand, 17662828 - 17662772
Alignment:
Q  170 tttgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||  ||| ||||||||| ||||||||||||||||||||||||    
T  17662828 tttgttgtagtatgactacaaatttgatggatggagaatattgttgctaaaaatata 17662772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 14789571 - 14789517
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||| |||||||||  |||||| ||||||||||||||||    
T  14789571 tgttgtagtatgactcaaaatttgatggatgaagaataatgttgctaaaaatata 14789517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 226
Target Start/End: Original strand, 19322410 - 19322463
Alignment:
Q  174 ttgtagtatgactcaaaaattgatggattgagaata-ttgttgctaaaaatata 226  Q
    |||||||||||||||||| ||||||||| ||||||| || ||||||||||||||    
T  19322410 ttgtagtatgactcaaaatttgatggatggagaatattttttgctaaaaatata 19322463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 10112626 - 10112680
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    ||||||||||||||| |||| ||| || ||  |||||||||||||||||||||||    
T  10112626 tgttgtagtatgacttaaaatttgttgaatgaagaatattgttgctaaaaatata 10112680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 169 - 226
Target Start/End: Original strand, 3873747 - 3873804
Alignment:
Q  169 ttttgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  3873747 ttttgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatata 3873804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 3265752 - 3265698
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  3265752 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatata 3265698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 32339094 - 32339148
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  32339094 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatata 32339148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 41384493 - 41384547
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  41384493 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatata 41384547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 43529871 - 43529925
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  43529871 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatata 43529925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 15808961 - 15809016
Alignment:
Q  171 ttgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    ||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  15808961 ttgttttagtatgactcaaaatttgatggatggagaatattgttgctaaaaatata 15809016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 28283813 - 28283759
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||    
T  28283813 tgttgtagtatgactcaaaatttgatggatggagaatatttttgctaaaaatata 28283759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 41382420 - 41382473
Alignment:
Q  173 gttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    ||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||    
T  41382420 gttgtagtatgactcaaaatttgatggatggagaatattgttgttaaaaatata 41382473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 608470 - 608524
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    ||||||||||| |||||||| ||||||||   |||||||||||||||||||||||    
T  608470 tgttgtagtatcactcaaaatttgatggaagaagaatattgttgctaaaaatata 608524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 1313081 - 1313136
Alignment:
Q  171 ttgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  1313081 ttgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatata 1313136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 746422 - 746476
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  746422 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatata 746476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 10622127 - 10622073
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  10622127 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatata 10622073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 25533107 - 25533161
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  25533107 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatata 25533161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 41848804 - 41848858
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  41848804 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatata 41848858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 174 - 226
Target Start/End: Original strand, 42989954 - 42990006
Alignment:
Q  174 ttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  42989954 ttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatata 42990006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 455572 - 455627
Alignment:
Q  171 ttgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    ||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||    
T  455572 ttgttgtagtatgactcaaaatttgatggatggggaatattgttgctaaaaatata 455627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 53918251 - 53918196
Alignment:
Q  171 ttgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    ||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  53918251 ttgttatagtatgactcaaaatttgatggatggagaatattgttgctaaaaatata 53918196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 457950 - 458004
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||| ||||||||| | ||||||||||||||||||||||    
T  457950 tgttgtagtatgactcaaaatttgatggatggggaatattgttgctaaaaatata 458004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 42991953 - 42992007
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||    
T  42991953 tgttgtagtatgactcaaaatttgatggatggagaatattgttgttaaaaatata 42992007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 51943042 - 51943096
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||| |||||||||  |||||||||||||||||||||||    
T  51943042 tgttgtagtatgactcaaaatttgatggatgaagaatattgttgctaaaaatata 51943096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 53916082 - 53916028
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||| |||| |||| ||||||||||||||||||||||||    
T  53916082 tgttgtagtatgactcaaaatttgagggatggagaatattgttgctaaaaatata 53916028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 4104484 - 4104429
Alignment:
Q  171 ttgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    ||||||||||||||||||||| ||||||||   |||||||||||||||||||||||    
T  4104484 ttgttgtagtatgactcaaaatttgatggaagaagaatattgttgctaaaaatata 4104429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 6561613 - 6561667
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||| ||| |||||||||  |||||||||||||||||||||||    
T  6561613 tgttgtagtatgactcgaaatttgatggatgaagaatattgttgctaaaaatata 6561667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 27636212 - 27636158
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    ||||||||||||| | |||| ||||||||| ||||||||||||||||||||||||    
T  27636212 tgttgtagtatgatttaaaatttgatggatggagaatattgttgctaaaaatata 27636158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 27000082 - 27000123
Alignment:
Q  171 ttgttgtagtatgactcaaaaattgatggattgagaatattg 212  Q
    |||||||||||||||| |||| ||||||||| ||||||||||    
T  27000082 ttgttgtagtatgactgaaaatttgatggatggagaatattg 27000123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 17325228 - 17325173
Alignment:
Q  171 ttgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  17325228 ttgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatata 17325173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 24325346 - 24325401
Alignment:
Q  171 ttgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  24325346 ttgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatata 24325401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 4131882 - 4131828
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  4131882 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatata 4131828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 9460013 - 9459959
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  9460013 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatata 9459959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 9463840 - 9463786
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  9463840 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatata 9463786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 39931762 - 39931816
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  39931762 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatata 39931816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 46432636 - 46432582
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  46432636 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatata 46432582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 47905956 - 47906010
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  47905956 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatata 47906010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 48664852 - 48664906
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  48664852 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatata 48664906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 170 - 226
Target Start/End: Complemental strand, 28998846 - 28998790
Alignment:
Q  170 tttgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||    
T  28998846 tttgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaactata 28998790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 170 - 226
Target Start/End: Complemental strand, 29004562 - 29004506
Alignment:
Q  170 tttgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||    
T  29004562 tttgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaactata 29004506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 31736115 - 31736061
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||| ||||||||  ||||||||||||||||||||||||    
T  31736115 tgttgtagtatgactcaaaatttgatggaaggagaatattgttgctaaaaatata 31736061  T

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Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 6115718 - 6115663
Alignment:
Q  172 tgttgtagtatgactcaaaaatt-gatggattgagaatattgttgctaaaaatata 226  Q
    |||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||    
T  6115718 tgttgtaggatgactcaaaaatttgatggatggagaatattgttgctaaaaatata 6115663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 15295440 - 15295385
Alignment:
Q  171 ttgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    ||||||||||||||||||||| ||||||||   |||||||||||||||||||||||    
T  15295440 ttgttgtagtatgactcaaaatttgatggaagaagaatattgttgctaaaaatata 15295385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 6997214 - 6997268
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||| ||||||||||||||| ||||||||| ||||||||| ||||||||||||||    
T  6997214 tgttatagtatgactcaaaatttgatggatggagaatattattgctaaaaatata 6997268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 27337532 - 27337478
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||| ||| ||||||||| | ||||||||||||||||||||||    
T  27337532 tgttgtagtatgactccaaatttgatggatggggaatattgttgctaaaaatata 27337478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 27339730 - 27339676
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||| ||| |||| |||| ||||||||||||||||||||||||    
T  27339730 tgttgtagtatgactccaaatttgacggatggagaatattgttgctaaaaatata 27339676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 45694024 - 45693970
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    ||||||| ||||| |||||| ||||||||| ||||||||||||||||||||||||    
T  45694024 tgttgtactatgattcaaaatttgatggatggagaatattgttgctaaaaatata 45693970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 170 - 226
Target Start/End: Complemental strand, 2949817 - 2949761
Alignment:
Q  170 tttgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||| ||||||||||||||| || ||||||  |||||||||||||||||||||||    
T  2949817 tttgttatagtatgactcaaaatttcatggatgaagaatattgttgctaaaaatata 2949761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 13785835 - 13785792
Alignment:
Q  182 tgactcaaaaattgatggattgagaatattgttgctaaaaatat 225  Q
    |||||||||||||||||||| ||||||||||| |||||||||||    
T  13785835 tgactcaaaaattgatggatggagaatattgtcgctaaaaatat 13785792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 16561131 - 16561185
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||| |||||| |||||| ||| |||||  |||||||||||||||||||||||    
T  16561131 tgttgttgtatgattcaaaatttgttggatgaagaatattgttgctaaaaatata 16561185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 10115466 - 10115506
Alignment:
Q  182 tgactcaaaaattgatggattgagaatattgttgctaaaaa 222  Q
    |||||||||| |||||||||| ||||||||||||| |||||    
T  10115466 tgactcaaaatttgatggattaagaatattgttgcaaaaaa 10115506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 32260746 - 32260790
Alignment:
Q  182 tgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||| |||||||||  |||| ||||||||||||||||||    
T  32260746 tgactcaaaatttgatggatgaagaagattgttgctaaaaatata 32260790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1674 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold1674
Description:

Target: scaffold1674; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 95 - 41
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  95 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatata 41  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 23452829 - 23452775
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  23452829 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatata 23452775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 42924094 - 42924040
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  42924094 tgttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatata 42924040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 35218568 - 35218511
Alignment:
Q  169 ttttgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    ||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||    
T  35218568 ttttgttgtagtatgactcaaaatttgatggatgaagaatattgttgctaaaaatata 35218511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 35216184 - 35216130
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||| |||||||||  |||||||||||||||||||||||    
T  35216184 tgttgtagtatgactcaaaatttgatggatgaagaatattgttgctaaaaatata 35216130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 27136506 - 27136451
Alignment:
Q  171 ttgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    ||||||||||||||||||||| |||||||||  ||||||||| |||||||||||||    
T  27136506 ttgttgtagtatgactcaaaatttgatggatgaagaatattggtgctaaaaatata 27136451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 42452448 - 42452503
Alignment:
Q  171 ttgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||| |||| |||||||||  |||||||||||||||||||||||    
T  42452448 ttgttgtagtatgacttaaaatttgatggatgaagaatattgttgctaaaaatata 42452503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 27583907 - 27583853
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||  |||||||||  |||||||||||||||||||||||    
T  27583907 tgttgtagtatgactcaaattttgatggatgaagaatattgttgctaaaaatata 27583853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 34575696 - 34575649
Alignment:
Q  179 gtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    ||||||||||||| |||||||||  |||||||||||||||||||||||    
T  34575696 gtatgactcaaaatttgatggatgaagaatattgttgctaaaaatata 34575649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 28568346 - 28568390
Alignment:
Q  182 tgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||| |||||||||  |||||||||||| ||||||||||    
T  28568346 tgactcaaaatttgatggatgaagaatattgttgttaaaaatata 28568390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 173 - 226
Target Start/End: Complemental strand, 2184 - 2131
Alignment:
Q  173 gttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  2184 gttgtagtatgactcaaaatttgatggatggagaatattgttgctaaaaatata 2131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 12062 - 12007
Alignment:
Q  171 ttgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||    
T  12062 ttgttgtagtatgattcaaaatttgatggatggagaatattgttgctaaaaatata 12007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 78883 - 78937
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    ||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||    
T  78883 tgttgtagtatgacttaaaatttgatggatggagaatattgttgctaaaaatata 78937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 51709 - 51763
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  51709 tgttgtagtatgactcaaaatttgatggatggagaataatgttgctaaaaatata 51763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 50159 - 50213
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    |||||||||||||||||||| |||||||||  |||||| ||||||||||||||||    
T  50159 tgttgtagtatgactcaaaatttgatggatgaagaataatgttgctaaaaatata 50213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0511 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 1734 - 1789
Alignment:
Q  171 ttgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    ||||||||||||||||||||| |||| |||   |||||||||||||||||||||||    
T  1734 ttgttgtagtatgactcaaaatttgaaggaagaagaatattgttgctaaaaatata 1789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 4546 - 4600
Alignment:
Q  172 tgttgtagtatgactcaaaaattgatggattgagaatattgttgctaaaaatata 226  Q
    ||||| ||||| |||||||| |||||||||  |||||||||||||||||||||||    
T  4546 tgttgcagtataactcaaaatttgatggatgaagaatattgttgctaaaaatata 4600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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